Eliv004894.1
Basic Information
- Insect
- Empis livida
- Gene Symbol
- -
- Assembly
- GCA_963932195.1
- Location
- OZ010646.1:7671092-7675309[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.74 45 4.9 2.6 2 19 331 348 330 351 0.92 2 18 0.33 20 6.1 5.4 2 23 362 383 361 387 0.90 3 18 0.053 3.2 8.5 0.6 3 21 392 410 391 411 0.94 4 18 0.21 13 6.7 1.8 2 23 420 441 419 442 0.93 5 18 0.013 0.76 10.5 0.6 1 23 447 470 447 470 0.95 6 18 0.00034 0.02 15.5 1.7 1 23 476 498 476 498 0.98 7 18 0.014 0.83 10.4 0.1 1 23 507 530 507 530 0.96 8 18 0.00059 0.036 14.7 3.8 1 23 547 569 547 569 0.98 9 18 0.2 12 6.8 5.0 1 23 574 596 574 596 0.99 10 18 1.5 89 4.0 0.2 1 23 612 637 612 637 0.96 11 18 0.00034 0.02 15.5 2.8 1 23 645 668 645 668 0.95 12 18 0.0045 0.27 11.9 0.0 1 23 674 697 674 697 0.95 13 18 0.0015 0.089 13.4 1.7 3 23 704 725 702 725 0.94 14 18 8.6e-05 0.0052 17.3 1.7 2 23 729 751 728 751 0.96 15 18 2.1 1.3e+02 3.5 2.9 1 21 757 777 757 780 0.84 16 18 2.9 1.7e+02 3.1 0.4 1 23 786 808 786 808 0.94 17 18 3.5e-06 0.00021 21.7 2.5 1 23 814 836 814 836 0.99 18 18 0.017 1 10.1 0.2 1 23 842 867 842 867 0.97
Sequence Information
- Coding Sequence
- atgccacctattaaaatattaactgtTGCTGATGTTACaacaaacaaatttacaaGTAATAATCGATGTTTACGGTGTTCAGCTAATTTAGGTGAACATgataattatcaattaatttttgatgaaaCTGGTCAAGagatgaatattaaaaaactattaattgatTGTTTTGATATTCAGATAGAATTAGatactgaaaaatttcaaGCACTTTGTGAAGATTGTTTAACTGAATTAATTGAAACTTTTGATATACTAGAATTAAaacgtaataaatttaattctaatgtaacaaatataaatactacTGAAGTATTAACTTTAGCAACAtcatctaataaaattaataatgttattaatataaaatctgaAGAATTAAATGATATAGAAGATAACGATGGATATATATTTGAAGATAATGATTATATTACGAAAACAGAATCTGAATCACAATGTTCAAAAGAAGTATTAGAAGaagaagatttaaaaaatattgattatattatTCAAGATGTTTGTGATGCTAACGAAGAAGGTGAATCGATTTTAGCTGAATATACAATTGAAAATGAAGAAGATGAAATTGTAGATTCTCCTGATGTTTATCCAAAAGAACTATTATCAGTTGATTATAATGAGGAGAATTGTGATGATCCTGGTGATATATGCGATAATCGTGAAGAATATGAAGAAATCGATTATTTAGATGAGGATGATTTAACCAAATTGAAAGATTATATGAATAAATCAAtttgtagtaattttaaagatattacaTTTCCTGATGTAATAAATTGTCGttTATGTAATGATACTTTGGATAAACATTCAACGGTTTTAGATCATTGTGAAGataaacattataataaagatgattcagtttatttatgtgtaattgatgaaaattgtgatcaatttaattctttagACGATTTATCCAATCATTTGGTATTTAAACACTATGATTTAGACACtttgacAGTATATTCACAGtgtttattttgcacaaaacgATTTAGTAACAttataatgtttaataaacATTCATGTTATGATAACAGAAATACATCAAGATCAGCAACTGAATGtcatttatgtaataaaagttttcgATCAAATAAAAGatatcgttttcatttacaatttcatttgGAAAAACATCGTCCACAAGCATGTTTTATTTGtcgtaaattttttgatgatcataatgaattatttgaaCATCTTATGTATGAGAGAGAAGCTAAAGACgcattaatttgtaaattatgtgatagaaattttcttcaattagacacatttgaaaatcataaaagtgTACATCATTTAAAGCGACCATATTCGTGTGCATTTTGtgataaaacatatttaagtaGTCAACAATTACAGGATCacttaaatgcacaacatttacaaaagaatatttataaatgtaaaatatgtgGAAAAGAGTTTTTTAAAcgtaatattttacaaaaacatatattaaatcataaaaaaccTGTAGAAGTTTCAGCTTTTTCATGTAGTGATTGTggatttattggaaaaaatcGTGAATCtgttaaaGTACATATtgataaaatacataaaaataatattttagttaatattttagcTAATATGCATACAATTGCATATTGTTGTGAATATTGTGAAATGGCATTTAATtcatgtgaaaatttaatattacatcgTAATACACACAAAGATAAACTATATCAATGCCAATTATGTTCAGTTACTTttgatagttttaaaaaagtaaaaactcATCGTCATActcatcaaaaatatattgatattcGAAAAATCTTTCCAATTACAAGACATTATGTTTGTGATGTTGagggTTGTACAAGTCATTATATGCAGTGGATTGCTTTAGTGTCACACAAAAGAAATATTCATCTTGTTGGTAaacaaaaaccatttaaatgtGAACAATGTAATGAATCATGTGCTAATAAgaGAAGTTTAAATCAACATATTCAAGACAAACATGGGAAAAAACCAACATTTCCATGTCCATTTTgtccaaaaatttatacaacacCAATGGCAATTGCTGTTCATATAGCTAGAATGCATAATAACAataaattGGCGTGTGAGCATTGTGGTacattatgtaaaaataaagatgCTTTAGAAAAGCATATTATTAATACTCATGAAGTTTTAACATGtcatatttgtgaaaaagttttaaaaaatatgaagaatttAAGAACACATATTAAAATGGttcacaaaaaagaaaaacgatttttttgTCAGTACTGTAAAAAAggttattataataattgtgaTCGGCTTACTCATGAAGAAGcgattcatataaaaaataaagttttcactTGTGATTTGTGCTCATATATAACACCATATCGGGAATCAATATTAGTCCATAACAAAAATCATACTAATACAAAACCGTATGAAtgtgaaatatgtacaaaaaaatttgcacgaaaatattcattaacaTTACATAAAAGACGTCATGCTGAAGTCAGAAAatatatttgtCCATATAAAGATTGTGACAGTTCATATCCAAATCAAGGAATTTTAAATCTACATATGAGAAGCAAACATTCTCAAGAAACAATTCTTATATCAAGAGATAAAAAAGTACCTgttaaaaaagcaaaattagctaaaatacttaaaaaaggAATTCCATCTGATTATTTGgttgaaaataatgatatcACTGATGAGAAtgacttaaattttattgatgaaGTCAATAGTGATTCAAATGATATTAATCCATTAAATAGTGAGACTGGAGATGATGAGAACACTGATggtaataatgaaaatagtaatcctgatgatgataatgaaaattatgaaaatcaacataccgatgatgatgattatgataataattatgaaaataaaaatactgatgatgataatgataattatgaaaataaaaataccgaAACGGAACCAGAGGATAgtattgaatatattattactGAATTACAAAATGATGATGTTTGTACTATTGATGATCAACACCAGTCCAGTGAGTTTGTTGATAGTATTGAAGATGTTGAAATGGAAGATTgtgaaacaattattttaaatgatgaGTATATATTAAGTCAAAATGGTGAAATTGAAGCATATGGAACTATAtcagattaa
- Protein Sequence
- MPPIKILTVADVTTNKFTSNNRCLRCSANLGEHDNYQLIFDETGQEMNIKKLLIDCFDIQIELDTEKFQALCEDCLTELIETFDILELKRNKFNSNVTNINTTEVLTLATSSNKINNVINIKSEELNDIEDNDGYIFEDNDYITKTESESQCSKEVLEEEDLKNIDYIIQDVCDANEEGESILAEYTIENEEDEIVDSPDVYPKELLSVDYNEENCDDPGDICDNREEYEEIDYLDEDDLTKLKDYMNKSICSNFKDITFPDVINCRLCNDTLDKHSTVLDHCEDKHYNKDDSVYLCVIDENCDQFNSLDDLSNHLVFKHYDLDTLTVYSQCLFCTKRFSNIIMFNKHSCYDNRNTSRSATECHLCNKSFRSNKRYRFHLQFHLEKHRPQACFICRKFFDDHNELFEHLMYEREAKDALICKLCDRNFLQLDTFENHKSVHHLKRPYSCAFCDKTYLSSQQLQDHLNAQHLQKNIYKCKICGKEFFKRNILQKHILNHKKPVEVSAFSCSDCGFIGKNRESVKVHIDKIHKNNILVNILANMHTIAYCCEYCEMAFNSCENLILHRNTHKDKLYQCQLCSVTFDSFKKVKTHRHTHQKYIDIRKIFPITRHYVCDVEGCTSHYMQWIALVSHKRNIHLVGKQKPFKCEQCNESCANKRSLNQHIQDKHGKKPTFPCPFCPKIYTTPMAIAVHIARMHNNNKLACEHCGTLCKNKDALEKHIINTHEVLTCHICEKVLKNMKNLRTHIKMVHKKEKRFFCQYCKKGYYNNCDRLTHEEAIHIKNKVFTCDLCSYITPYRESILVHNKNHTNTKPYECEICTKKFARKYSLTLHKRRHAEVRKYICPYKDCDSSYPNQGILNLHMRSKHSQETILISRDKKVPVKKAKLAKILKKGIPSDYLVENNDITDENDLNFIDEVNSDSNDINPLNSETGDDENTDGNNENSNPDDDNENYENQHTDDDDYDNNYENKNTDDDNDNYENKNTETEPEDSIEYIITELQNDDVCTIDDQHQSSEFVDSIEDVEMEDCETIILNDEYILSQNGEIEAYGTISD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -