Basic Information

Insect: Empis livida
Gene Symbol: salm
Assembly: GCA_963932195.1
Location: OZ010649.1:36446183-36456938[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.6e-05 0.00099 19.6 0.9 1 23 339 361 339 361 0.98

2 9 8.7e-06 0.00052 20.5 1.1 1 23 367 389 367 389 0.97

3 9 7.7 4.7e+02 1.7 2.2 6 23 642 659 638 659 0.79

4 9 1.7e-07 1e-05 25.9 0.2 1 23 665 687 665 687 0.98

5 9 1.2e-05 0.00072 20.0 1.4 1 23 697 719 697 719 0.99

6 9 3.2e-05 0.0019 18.7 1.3 2 23 912 933 911 933 0.97

7 9 3.3e-07 2e-05 24.9 1.3 1 23 939 961 939 961 0.97

8 9 4.8e-06 0.00029 21.3 2.4 3 23 1154 1174 1152 1174 0.96

9 9 2.5e-07 1.5e-05 25.3 0.8 1 23 1180 1202 1180 1202 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.6e-05	0.00099	19.6	0.9	1	23	339	361	339	361	0.98
2	9	8.7e-06	0.00052	20.5	1.1	1	23	367	389	367	389	0.97
3	9	7.7	4.7e+02	1.7	2.2	6	23	642	659	638	659	0.79
4	9	1.7e-07	1e-05	25.9	0.2	1	23	665	687	665	687	0.98
5	9	1.2e-05	0.00072	20.0	1.4	1	23	697	719	697	719	0.99
6	9	3.2e-05	0.0019	18.7	1.3	2	23	912	933	911	933	0.97
7	9	3.3e-07	2e-05	24.9	1.3	1	23	939	961	939	961	0.97
8	9	4.8e-06	0.00029	21.3	2.4	3	23	1154	1174	1152	1174	0.96
9	9	2.5e-07	1.5e-05	25.3	0.8	1	23	1180	1202	1180	1202	0.98

Sequence Information

Coding Sequence: ATGTGTTCAATATTTGGtaacaaatttgaaaaacaaattcaacaatttcgtactaataaaaatgataatactATTAGTGAAATTTctgatcaaaataatataccaGTAATTGTAGCTGAAAAAGAAAcgaacaatataaaattaataaatccaaaaatgttagataatgatgatgaagaAGATATATTATCTGAACAggaagatgatgatgatggtaaTGGTGGTGATGGTAGTTCATCTGTTTTAGATTTATCACAAAAAGATAATATACCACCAGTGGGACATGTTACATTAGAAGCATTACAGCATACCAAAGTAGCAGTAGCACAATTTGCTGCTACTGCAATTGCAAATAGTAATAACTATGAAGAAGCAATACAAGATTTAGCAATGGTTCATTCAAcattatttagtttacaaCATCAACAATTAATGCAAATACAATTGATTCATCAATTGCAAACacaattgaataaaaatgatattagaCAAAATGATGATATTGATGAAGAACAAAAATCAATTGAGGATAGTGAACCAGAAGAAATTGTGgaagaaattaatgaaaaacaaattaaagaaGAACAAATAGAAGAAGATTTATCTGTAAAAGATTATAGTAAAAAAGAAGTTgttgtagatttttttaaagccAAAGATATTCAGGATAAAATCAAAACAGATACAGAAGATGTAAAAGTAATTTGTAATGAACCaccaaaagaagaaaaaaaagataatgagtatggaaaaataaattataatgttgaTTCTTCATTACAAACACCATTATGTCATATCAGTTCCTCATTAGCATCAACAATAATAACTAATCATGATCCGCCGCCACCaccaaatgaattaaattctttagaaATGTTACAAAAACGAACTCAAGAAGTCTTAGATTCAGCCTCACAAAGTTTATTAGCTAGTAATATGGCTGAGGAATTGGCATTTCGTCGTGATTCAATGTCTGGCGATGGTACGGGTAAAGGTGAAGGATTTTTTAAACATCGTTGCCGATACTGtggtaaaatttttggttctGATTCGGCATTGCAAATACATATACGATCACATACCGGTGAACGACCATTCATTTGCAATGTATGCGGAagtaaatttacaacaaaGGGTAATTTAAAAGTACATTATCAAAGGCATACACAAAGGTTTCCAGATTTCCCAATGGTACCTGGTGGTAATTATCCTGAGCATTTTCATCCATCTATGTTAAATGGTAGTAGTAATGGTAGTAATGGTGGTGGCAGCGGAAATTGTGGCAGTATGTCAGGAGGTAGTAATCAAAATAGACTATCACCAATACCTCCACCTAATAGGCCACCACCTGGTTCAATGAATGATCAAATGCCATTACCATTTCCACCATTTCCTTTACCTAGTTTTCGGCATGCTACTCAAGGTCTTAttccaccaccaccaccatcaTCAGATCCGCCTGTAGACCAAGATGAAGATCAGCAAGAAGATAATATATCTGTTGAACAGGACGAACCAGCTGATTTAAgtaaaccaaataaaattgctCGTCAGGATGATAttgataatcaaaataaagacctacaaaaaattaatataaataaaaacggTGATATGAAAACGGTTTTCAAGAATTTTGAAGATGTTgtttataatatagaaaatagtaAACAAAGTAGCCCGGAAGAGAGTGCTAAtgatttatcaaataaaacatCTCGTCCTGCATCAATTAATCGGATTACACTAACACCACCGCATGATTATATTTCGGATCGAATACCAACCACAACTCtagaaaataatgataattcaTGGGAAGATTTGATAGAAATtgataaaacatcagaaacaTCAAAACTTCAACAACTAGTcgataatatagaaaataaattaacagaTCCGAATCAATGTATTTTTTGTCAGAAAATTATGTCATGTCGTAGTTCATTACAAATGCATTTACGTACACATACCGGCGAAAGACCATATCGTTGTAGAATTTGTGGCCGGGCATTTGCGACAAAAGGTAATCTAAAAGCACATATGACAATTCATAAAATCAAACCACCAATTCGTAGTCAATTTAAATGTCCAGTTTGTCatcagaaattttcaaattcaattgttCTACAACAACATATACGAATTCATACAACAGCATCTGGTGAAAATGGTTTCTcacaaaataatgacaatttAGATTTAGATATAATGAATCGTAGTTATAGTGAGGGTCATGTTTCAACAACAGCATCAGAATATTCTGGTCATCGTTCATCTGGTTCATCAATGCAAGATGATTTTTATGATGATTTTGATATGGACAGTGATGGTGGTGGTGGACATGGTGGAAACGATGGTGTAGGTGATGAAATTTCAAATGTTGATGAAGAGAATAAGACTGATGACGAGATTGGCATAAAtagaaataagaataaaactattattagtAATGAGgataaaaataatgacaatGACGATAATGATATTGAACAGGCATTAGATTTAACaccaaaatcaaattttattcaagaTAAAAAATCTGATTTAGAAATGTCTATACAACAATTAGGTATTTTATCACAATTTCCATTgatttcatcatcatcatcatcatcgaaTGGTATTATGAATACATCagattcattaaataatttaacagtGCAATCAATATTACCATCAAATCCTTTTGGTTTAATAGgtACTCGAAATTCTATTACAACTACTACGtgcaatatttgttttaagagttttccaAATCAAACAACATTAGAATTACATTATCGAAGTCACACCAAAGAACGACCTTTTCAGTGTACCATCTGTGATAAAGCATTTACATCTAAGggTAATTTAAAACAgcattatttaaatcatacaTTAAAAGATTCAACTGAatcaattaatgaaaattctgaAACTTGTGAagatttatcaataaaatcaacaaaatcacCAGAAGAAAAGTATGAAAAGACTGTATCACCAATATTACCATCAGTAccagttaataataataatgaaaatcgaCCACAAACAAtacaagttaaaaattttgctaATGATAGTAATTTTGATAGAAATGATGAAAATcgttttgatttaaaaagatCTTTATCTGAAATTGAAGAACCTTTAATGTTAGCAAAACGACAAATTTgTTCACCAAAAAAGTTTAGtaatgaaaatgatataaaaattcctTTACATTCTGATTCACCAATACAAAACATTCCTCAACCTCCACCACCTCCATCATCATTATCAGCTCCATTATCACAAATGCATTCACTTTCACTATTTCGTAGTGAACCACCACAACTTCATCCTCATTTTCTAcatcaccatcatcatcaccatcatcatcaacagcaacaacaccaacaacaacaacaacaacagcagcaacaaTCTACATCATCATTAGAACCACCTGTTAATACTAAACATTTGTGTACAATTTGCCGCAGAAATTTTAGTTCAAGTTCAGCACTACAAATTCATATGAGAACACATACAGGTGATAAACCATTCCGTTGTTCAGTATGCCAAAAAGCATTTACTActaaaggaaatttaaaggtTCACATGGGTACTCATATGTGGACAAATAATTCGTCAAGACGTGGTCGTCGTATGTCCTTAGAATTACCAATGAATAGACCACCACCAATACCATTAGGTGGCCCACATGATCCTGAATTTTTACAGCGAAGAGCTGAAatgttttatccatatttacCACCATTTTTAAATGGTGGTGGCTTACAATCAAAGAATCAACCATCAAATTATCAAAATCTTGGTTCATTTCATCCTGgtataccaaataaatttaatggagTATTAGGTTTTAGTCCATTCGGTCCACGATTACATGGATTAAGCGGTAATGGTTCTCAACCACCACCACATCTTCATTTACCTGGCCTATCACCATCATCTAGTGATAAATCATCACGACATAATCATAGTCCGGGTAGTGAAGAATCACAAAAAATTAGCCCAAATATTGAATCAACTAGTAAGGATTCATGGAATTCATCATCAAATTTTGAAAGAGGTCATTCAAgtgaaacagaaaaatcatttaGTTCGGTACATGATGATGTATCAATATTACAATCGAATACATCTAATAATCGGCCAGAAGGTTTAAAAGTGTAA
Protein Sequence: MCSIFGNKFEKQIQQFRTNKNDNTISEISDQNNIPVIVAEKETNNIKLINPKMLDNDDEEDILSEQEDDDDGNGGDGSSSVLDLSQKDNIPPVGHVTLEALQHTKVAVAQFAATAIANSNNYEEAIQDLAMVHSTLFSLQHQQLMQIQLIHQLQTQLNKNDIRQNDDIDEEQKSIEDSEPEEIVEEINEKQIKEEQIEEDLSVKDYSKKEVVVDFFKAKDIQDKIKTDTEDVKVICNEPPKEEKKDNEYGKINYNVDSSLQTPLCHISSSLASTIITNHDPPPPPNELNSLEMLQKRTQEVLDSASQSLLASNMAEELAFRRDSMSGDGTGKGEGFFKHRCRYCGKIFGSDSALQIHIRSHTGERPFICNVCGSKFTTKGNLKVHYQRHTQRFPDFPMVPGGNYPEHFHPSMLNGSSNGSNGGGSGNCGSMSGGSNQNRLSPIPPPNRPPPGSMNDQMPLPFPPFPLPSFRHATQGLIPPPPPSSDPPVDQDEDQQEDNISVEQDEPADLSKPNKIARQDDIDNQNKDLQKININKNGDMKTVFKNFEDVVYNIENSKQSSPEESANDLSNKTSRPASINRITLTPPHDYISDRIPTTTLENNDNSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKIMSCRSSLQMHLRTHTGERPYRCRICGRAFATKGNLKAHMTIHKIKPPIRSQFKCPVCHQKFSNSIVLQQHIRIHTTASGENGFSQNNDNLDLDIMNRSYSEGHVSTTASEYSGHRSSGSSMQDDFYDDFDMDSDGGGGHGGNDGVGDEISNVDEENKTDDEIGINRNKNKTIISNEDKNNDNDDNDIEQALDLTPKSNFIQDKKSDLEMSIQQLGILSQFPLISSSSSSSNGIMNTSDSLNNLTVQSILPSNPFGLIGTRNSITTTTCNICFKSFPNQTTLELHYRSHTKERPFQCTICDKAFTSKGNLKQHYLNHTLKDSTESINENSETCEDLSIKSTKSPEEKYEKTVSPILPSVPVNNNNENRPQTIQVKNFANDSNFDRNDENRFDLKRSLSEIEEPLMLAKRQICSPKKFSNENDIKIPLHSDSPIQNIPQPPPPPSSLSAPLSQMHSLSLFRSEPPQLHPHFLHHHHHHHHHQQQQHQQQQQQQQQQSTSSLEPPVNTKHLCTICRRNFSSSSALQIHMRTHTGDKPFRCSVCQKAFTTKGNLKVHMGTHMWTNNSSRRGRRMSLELPMNRPPPIPLGGPHDPEFLQRRAEMFYPYLPPFLNGGGLQSKNQPSNYQNLGSFHPGIPNKFNGVLGFSPFGPRLHGLSGNGSQPPPHLHLPGLSPSSSDKSSRHNHSPGSEESQKISPNIESTSKDSWNSSSNFERGHSSETEKSFSSVHDDVSILQSNTSNNRPEGLKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00644428;
90% Identity: -
80% Identity: -