Eliv012526.1
Basic Information
- Insect
- Empis livida
- Gene Symbol
- -
- Assembly
- GCA_963932195.1
- Location
- OZ010648.1:13518854-13524183[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0019 0.12 13.1 5.8 1 23 168 190 168 190 0.99 2 14 0.00062 0.037 14.6 0.5 2 23 197 218 196 218 0.96 3 14 0.087 5.2 7.9 0.7 1 23 224 246 224 246 0.95 4 14 0.00019 0.012 16.2 5.3 1 23 252 274 252 274 0.98 5 14 0.00044 0.026 15.1 1.7 1 23 280 303 280 303 0.97 6 14 0.00012 0.0073 16.9 0.5 1 16 308 323 308 325 0.94 7 14 8.1 4.9e+02 1.7 0.4 1 11 334 344 334 351 0.72 8 14 0.0012 0.071 13.8 0.8 1 23 525 548 525 548 0.96 9 14 0.0046 0.28 11.9 1.1 1 23 551 573 551 573 0.98 10 14 2.7e-05 0.0016 18.9 5.3 1 23 579 602 579 602 0.96 11 14 0.0016 0.098 13.3 0.5 1 23 608 630 608 630 0.98 12 14 0.004 0.24 12.1 6.1 1 23 636 658 636 658 0.98 13 14 9.5e-06 0.00057 20.3 0.8 2 23 664 686 663 686 0.96 14 14 4.3e-06 0.00026 21.4 7.9 1 23 692 714 692 714 0.99
Sequence Information
- Coding Sequence
- ATGGCATCTCAGTTTGGAGCAAATGCAcatgaaaaacttttagaaatctatcaaattaatgaaaaagatGTCCCCGATACTGGCCAAAATCCAAtctttaataatcataataatgaaTCAGTTACTGAAAATGAAtgtattattgaaaatgttcAAGAAATAGATTCCATTATTAAAGAAGATATCaatgattatataaatttagaaaaagaagaaaataatgacATTGCAAATGATtatgaaattgaatatttagaCCATGAAATAGATTTACAAGAATTTCAAGaagaaataaatgtaaatacgacagaaattaagaaaattgaaataatgaaTTGTGAGAATATATCTAAACAATTTGAATTAGATGAAGAATTGAacgatttaaaagaaaataataaaagtttaaataaatcttcaaaTGATAATATATTAACTAATAATCATTTAGATTTAGACCAAAACGtgtataaaaaatcaaaaaaaggtataagtgaaaattttaaatgttcacATTGTGAGCATAAATTTCGAAGTGAAAAAACCTATTTGGCTCATATAAATATGCATAATGGATTATCACCTTGGATttgtgaaatatgtagCAAAGGTTTTCAATATCGTGTTAATTACAATTACCATatgaaaaatcatgaaaaCAAGCGTTCatttatttgtacaatttgttcaaaaggatatatatgtaaatggGATTTGAAAATTCATGAGAGTGTACATACTAAAAAAAGACCTTTTAGTTGTCAATTTTGCAataaaTCATTTCGTATTCGAAGTCATTGGAAACAGCATTTACAAACCCACACCGATACTAATGCTTTTGAATGTTtcttttgtaaacaaaaatataaaagtagagcaagtttaaaaattcatataaattcaatacacaataacattaaattttcatgtaatatatgtgataaaagttttaatagaaAACATCATTTAGTGattTATGATAATGATGATTTCCCACACTATATGTGTCCATATTGTACATTACAATTGAaacttttaagtaaatttaagaaaaaggCTATAGatacttataaaataattgagtaTCAGTTAAAATCTAccgaaaatatagaaaatattagtgATGGAAAAACAAAACTTCCTGAAAATACTATATCAATTCTTGTTGATATTCATGAAGAAGAAGATGATGAAACAGAATTAATTACGACCACATCACCAGCAACTGAGACAATAATAGGCGATGATGAAAATGATGGTATGGAAGTTGTTATACAAGAAGTTCATTATGATGATTTCAATacacataatattaaaacaaataatagtGAAGACGAATTTTTGGAAGTGCAATTTCTTGAAAACGAAAGTATTAAAGATGAGGATGTTGCAGTTGAATCTGAACCAAAGGATGAAATATatgatgatataaatttatcaaatgtTTCTAACTCATTAATAGAAGAAGAAATTTATGAAGAATATACTGTtgatagtttaaaaaatgaaattaaaccggctaaacaaaaaactagaaaatatacaaataataatactaaatttgacaaaaaatttcagtgcgttgattgtaatattatattttttcaaaaaataaatttatcagagcatagaaaagaaaaacatcCACCATTCTCCTGTGATATTTGTGCAAAAAGATTCTTATCTCAAGACCGATATACAAGTCATATGAAAGTACATATGGGATTGCCGggatttaaatgtAAAGAATGtgataaaacatttaatcaaAAACAGCATTTAATATATCATACACAAAATTATCATAGTAATGAACGTAATTTTCAATGTGATTTATGTAGTAAAAGATCTCTTACAATAagtgatttaaaaattcatatgaGAGTACATAATGATGAAAGACGATATGAATGTGATGTTTGTAataAAAGATTTCGAGCTCATACACATATGACAAATCATCGATATACACATTTCGAAAAATGTATTGAATGTCCCCATTGTCATATTAAATATGCATCACCAAGTAcgttaaaaatacatataagaaGTGTCCATGAAGGATTGTGCCCATATGAATGTAATGTGTgtcaaaagaaatttaaaagaaaacatcatttaaatTCACATTTGAAAACTCATAAAAAATCACCACCAAAGACGCGAAAAAAATCATTGACAGAAAATAATGAAGAGATAATTCTTTTTACAActgaaatatga
- Protein Sequence
- MASQFGANAHEKLLEIYQINEKDVPDTGQNPIFNNHNNESVTENECIIENVQEIDSIIKEDINDYINLEKEENNDIANDYEIEYLDHEIDLQEFQEEINVNTTEIKKIEIMNCENISKQFELDEELNDLKENNKSLNKSSNDNILTNNHLDLDQNVYKKSKKGISENFKCSHCEHKFRSEKTYLAHINMHNGLSPWICEICSKGFQYRVNYNYHMKNHENKRSFICTICSKGYICKWDLKIHESVHTKKRPFSCQFCNKSFRIRSHWKQHLQTHTDTNAFECFFCKQKYKSRASLKIHINSIHNNIKFSCNICDKSFNRKHHLVIYDNDDFPHYMCPYCTLQLKLLSKFKKKAIDTYKIIEYQLKSTENIENISDGKTKLPENTISILVDIHEEEDDETELITTTSPATETIIGDDENDGMEVVIQEVHYDDFNTHNIKTNNSEDEFLEVQFLENESIKDEDVAVESEPKDEIYDDINLSNVSNSLIEEEIYEEYTVDSLKNEIKPAKQKTRKYTNNNTKFDKKFQCVDCNIIFFQKINLSEHRKEKHPPFSCDICAKRFLSQDRYTSHMKVHMGLPGFKCKECDKTFNQKQHLIYHTQNYHSNERNFQCDLCSKRSLTISDLKIHMRVHNDERRYECDVCNKRFRAHTHMTNHRYTHFEKCIECPHCHIKYASPSTLKIHIRSVHEGLCPYECNVCQKKFKRKHHLNSHLKTHKKSPPKTRKKSLTENNEEIILFTTEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -