Eliv016244.1
Basic Information
- Insect
- Empis livida
- Gene Symbol
- -
- Assembly
- GCA_963932195.1
- Location
- OZ010649.1:21665489-21668766[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.2 69 4.3 0.1 2 19 31 48 31 50 0.88 2 15 0.00062 0.037 14.6 0.5 1 23 100 123 100 123 0.92 3 15 1e-05 0.00063 20.2 0.3 1 23 126 149 126 149 0.98 4 15 0.21 13 6.7 0.4 2 13 158 169 157 170 0.90 5 15 4.5e-06 0.00027 21.4 1.1 1 23 186 208 186 208 0.97 6 15 8.7e-05 0.0052 17.3 3.6 1 23 214 236 214 236 0.98 7 15 3.3e-05 0.002 18.6 3.8 1 23 242 264 242 264 0.98 8 15 7.8 4.7e+02 1.7 4.0 1 22 270 291 270 291 0.93 9 15 2.6 1.6e+02 3.2 3.0 1 23 613 637 613 637 0.96 10 15 6.9e-06 0.00042 20.8 0.8 1 23 658 680 658 680 0.98 11 15 9.9e-05 0.006 17.1 3.0 1 23 688 711 688 711 0.97 12 15 0.0008 0.048 14.3 0.3 2 23 716 738 715 738 0.96 13 15 9.8e-05 0.0059 17.1 0.1 1 23 767 789 767 789 0.98 14 15 0.0094 0.57 10.9 7.1 1 23 795 817 795 817 0.97 15 15 2.7e-05 0.0016 18.9 0.2 1 23 823 845 823 845 0.98
Sequence Information
- Coding Sequence
- atggCATCTATAACACAAACTGATAAGGAAAAAATTACATGGTCTGATACAGACGATTCTTGGGATGAATTTGAAAAGGCCAAGGACCGAAAATGCACCTATTGCAcCAAAACTTTACAATCTGCTCAAGATATTACTGTACatgaagaaaattgtaatatagcGAAAACATGTTCAGCTACAAAAGTTACTTGTAAAGATggtacacaaaaatttatatgtgatATTTGTTGTTCAACttataaatatctatttaaattGGCTGAACATGAAAAACGACATGAACCACCTGGAGGatttatatgcaaatattGTGATGTACCATTTTGTACAGAAGTTCAATTAGAACAGCATACAGAGGAAGCACATAAAgtatttaaatgtcaaatttgTAAAGAAACATTTGAAACAGCGGATTCATATATTTCACATATCAGGATTCTTCACAATGGACATGATAAAGAATATAAGACATGTGAAGAATGTGGACGACATTTTAAATCaccattaatattaaaatttcacaaagaAACAAACTGTGGTACAAATAAACGTTATAATTGTAATGAATGTGGAAAGTCATTTCAAACAAATGGAACTTTAAAAactcataaattaattcatagtGGTGAAAAGAGATTTTGTTGCAGCTTTTGTGGTATGAAATTTACAGTTAAAGGATTATTAACAAGACATGAAAGAACTCACACCGGTGAGAAACCATATACTTGTAATTTATGTCAGAAATCGTTTTCACATCGAGATAGTTTAATTACGCATTCCACCACTCATACGGGAATAAAACCATATATTTGTGAATGTTGTGGTTCAAGATTTTCATGCACATCTAATCTTATACAGCATCGAAGAAAACGGCCTGAAACGTGCGGCCGACCGGAAAACTGTAAGAAATTGACAAAAGCATGTCCACGTCCGGGtgttaataATCCTCAATTTTTAACATCACATGAACCAGTTCGATTGTTTAAATCGCATCGTGTAATTAAATCaactgaaaaagaaaaacttaaagagaaaattaaaGCTGCTCgtgaagaaagaaaattagaaacaaaacggaaaagaaaaaggataaGTATAGAAAAACATATTGAAAATTCTGATGAAAAGATTAcagaaattattgataatcatctaaatttgaataaaactgaagaaaaatcggaaaaaattacaagattaGAAGATCATATTTCGGGAAGCCCAAAACATAGTACAacaacgaaaacaaaaataaaattatcagacgataatattaaaattacccaATTAAGAAGATCACCACGCATTAAGGTCGAAAATAaagttgataaaattattgctgAGGATGAAAATACGGAggttatttcaaaaattgctAATAATTCCGGTACAATTAAAAACGAATTAGAAACAGAACCATggaattttttagaaaatgaattaataacaaatggtaaagatattaaacaggaaatttttattgaaccagaaatttcaataaaaatttgtgatacaaatgaaaatatttctactaataatattaatataaaaaatgaatgtgATGATTCTGATTATCTTAACGATAATAAATCTTCTGATAATTCTTCAGAAAGTCAGTTTGAAGATAGTTTTAAATCGAAATCACAAAGAAAAAAGACTGAAACATtgagaaaaACAAAGGATGAAAAGATTGTACGTATTAAGCGTCCGAGgaaatcattaaaaactttatctaaaaaagttaatattgaaaatgaagtTAATAATGACAATGATCACAAAAGTGAAAGTAGTGATGAGAAAAATGAACTGCATTCATTAAAAAAGCAGTCTTATGAGTGTTATGAATGTCcagataaattatatactcgaaaaaatagttatcatatgcatttattaaaatatcataacaaAAATGAAGTTGAAATAAAGCATATTTTTCAAGTTCTCAACGAAAGTTTATCTGAatattcttgtaatatttGCGGCAAATTCTATTCAATGCAGAAAGCTTTAAAAAGTCATATTGAACGCCATGgACCAGATGGATTACTTGTACATAAATGTAAAacttgtacaaaatattttgcatctaaagaTGACTTAAAAGTACACTATCAAATTGATCACAAAGATAAAATAACTTGTGGAATTTgcaataaaacttataaagattcagaaattttaaatgcacATAAACGTAAGGCacattcaaataatttagtaattgaACCACAAAagagTCGTAGCGCTCTTGTTATACATGAACGATCTGATTGTGGCAAAAACccaatttttaaatgcaatatTTGTGGGAAAGCTTTAACAACAGCTGGTATTTTAAAATCACATATGTTAATACATTCTGGTGAATTACCACATCAGTGCTCGTATTGTGAAAAGCGTTTTCGCCAACGACAACAATTGACTTGCCATGAAAGAATCCACACGGGAGAAAAACCATATCCATGCACGtattGTGACAAAGCTTTCgcttttgttgaaaatttatatattcatttgTCAACTCATACTggtataaaaagatttatgtGTATTACTTGTGGTGATAGATTTTCATGTATTTCGGGCTTAAAAAACCATTGGCGAACAAATGCTACAACATGTGGATCTGATCCAAATAGATCAACAAAAGCAGTTGGTGAATATATGGGATTCCAAAAAGGCCAATTAgtacataagaaaaaaactgaataa
- Protein Sequence
- MASITQTDKEKITWSDTDDSWDEFEKAKDRKCTYCTKTLQSAQDITVHEENCNIAKTCSATKVTCKDGTQKFICDICCSTYKYLFKLAEHEKRHEPPGGFICKYCDVPFCTEVQLEQHTEEAHKVFKCQICKETFETADSYISHIRILHNGHDKEYKTCEECGRHFKSPLILKFHKETNCGTNKRYNCNECGKSFQTNGTLKTHKLIHSGEKRFCCSFCGMKFTVKGLLTRHERTHTGEKPYTCNLCQKSFSHRDSLITHSTTHTGIKPYICECCGSRFSCTSNLIQHRRKRPETCGRPENCKKLTKACPRPGVNNPQFLTSHEPVRLFKSHRVIKSTEKEKLKEKIKAAREERKLETKRKRKRISIEKHIENSDEKITEIIDNHLNLNKTEEKSEKITRLEDHISGSPKHSTTTKTKIKLSDDNIKITQLRRSPRIKVENKVDKIIAEDENTEVISKIANNSGTIKNELETEPWNFLENELITNGKDIKQEIFIEPEISIKICDTNENISTNNINIKNECDDSDYLNDNKSSDNSSESQFEDSFKSKSQRKKTETLRKTKDEKIVRIKRPRKSLKTLSKKVNIENEVNNDNDHKSESSDEKNELHSLKKQSYECYECPDKLYTRKNSYHMHLLKYHNKNEVEIKHIFQVLNESLSEYSCNICGKFYSMQKALKSHIERHGPDGLLVHKCKTCTKYFASKDDLKVHYQIDHKDKITCGICNKTYKDSEILNAHKRKAHSNNLVIEPQKSRSALVIHERSDCGKNPIFKCNICGKALTTAGILKSHMLIHSGELPHQCSYCEKRFRQRQQLTCHERIHTGEKPYPCTYCDKAFAFVENLYIHLSTHTGIKRFMCITCGDRFSCISGLKNHWRTNATTCGSDPNRSTKAVGEYMGFQKGQLVHKKKTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -