Basic Information

Insect: Empis livida
Gene Symbol: -
Assembly: GCA_963932195.1
Location: OZ010648.1:34832754-34834554[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.067 4.1 8.2 1.5 1 23 194 216 194 216 0.98

2 11 0.02 1.2 9.9 3.8 1 23 221 244 221 244 0.98

3 11 2.7e-06 0.00016 22.1 1.6 1 23 251 273 251 273 0.98

4 11 3e-07 1.8e-05 25.1 4.4 1 23 283 306 283 306 0.98

5 11 0.003 0.18 12.5 0.4 1 23 312 337 312 337 0.93

6 11 0.00021 0.013 16.1 1.7 2 23 352 373 351 373 0.97

7 11 1.4e-06 8.2e-05 23.0 1.9 1 23 379 401 379 401 0.95

8 11 8.9e-05 0.0054 17.3 4.8 1 23 407 429 407 429 0.97

9 11 0.00043 0.026 15.1 0.2 1 23 440 462 440 462 0.94

10 11 6.7e-05 0.0041 17.7 2.9 1 23 468 490 468 490 0.97

11 11 5.4e-06 0.00033 21.1 0.9 1 23 496 518 496 518 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.067	4.1	8.2	1.5	1	23	194	216	194	216	0.98
2	11	0.02	1.2	9.9	3.8	1	23	221	244	221	244	0.98
3	11	2.7e-06	0.00016	22.1	1.6	1	23	251	273	251	273	0.98
4	11	3e-07	1.8e-05	25.1	4.4	1	23	283	306	283	306	0.98
5	11	0.003	0.18	12.5	0.4	1	23	312	337	312	337	0.93
6	11	0.00021	0.013	16.1	1.7	2	23	352	373	351	373	0.97
7	11	1.4e-06	8.2e-05	23.0	1.9	1	23	379	401	379	401	0.95
8	11	8.9e-05	0.0054	17.3	4.8	1	23	407	429	407	429	0.97
9	11	0.00043	0.026	15.1	0.2	1	23	440	462	440	462	0.94
10	11	6.7e-05	0.0041	17.7	2.9	1	23	468	490	468	490	0.97
11	11	5.4e-06	0.00033	21.1	0.9	1	23	496	518	496	518	0.99

Sequence Information

Coding Sequence: ATGAACAATGAAATATGTcgaatatgtaaaaatactaatataacagaatttaattccaaaaatatattcattgctgaaaatattgaaattattgaaaaattactacTATGTGCAAATATACAGctaGAAAAAGAAGATCATctaccaaaatttatttgtcagGATTGCgaattggaattaaatttagcTTTTAACTTTCGATTAAAATGTGAGCAAGTCGATGCAGAACTACGGGAACTATGCCAAATCGAACAAGTAATTGAATTTGACGAAATCGCTGAATATGAAATTCCACataattttgaacataatgaagaaaatgaaattaaaaaagaaattcgtattgaatttgaaattttaagagAGCCGATTGATATAACattcgaaaatataattacagatgataacaatttgaaatatgaaacCGCATCTTCAATcaaaagtgaaaatataaatgatgaTGTTAACAGTTCCAGAGATGACACATGCTCAAATAATGTAATTGATCCTATAAGTGTCAacgaaattaaCGATAAGCCTAAAGAGAAATTAGAGGGCGAAACTAAAGAAATTGGTCGGTTTGTTTGTGAAACATGTCAATTTACAACAGatctttataataattatcgaTTGCACATAAAATCTCATGGTGATGAACGATTTCAGtgtgaaatatgtacaaattgGTTTAAATCAAAATGTATGTTAAAAAGCCACCTTAATACTACtcataataaacatttaaattcttatacaTGCAATCAATGTGGTAAAACTTTATCAAGTAGACGAAACTTGCGAAGTCATATTTCTAATCATAATGAACATTATATATTACGCCAGCATCATAAATGTACAATTTGTGGACAAAATTTCACCCGAAAGGATAATTTACGAACACATCTAAAAACATTCCACACTGAtgttagaaattatatttgcgAAGTAGAcaattgtaacaaaatttttaaatctatgaAAGGcttaaaaaaccataaattacaAGTACATAATCTACATAATAATGAgttggttaaaaaatataaaaaagtggAATGTTCACAAtgtaataaactttttcatactaatgcattattaaaaatacatttgcGATCTCATACTGGAGAGAAaccatttttatgtaatgaaTGTGGTAAATGTTTTTCAACTCAAAGTAGTTTAAATGGACATACGTTGATACATAAAAACTTAAAGCCACATAAATGTGATATTTGTAATGTATCATTTCGACGATATAACCATTTAAAGTCTCACAGAATTATACATACTGGCGAGCAGAATAATTGTAAGAAACCATATTTGTGTACTGAATGTGGTAAATCTTTTGCATTTCGAAGTCCTTTTATTATACATagtttaatacataaaaacataaaaccacaTAAATGTGATATTTGTAATGTATCATTTCGACAATATCCTCATTTACAGGCACACAGAACTATACATACTGGCGAGAAGAATTACAAATgtgatttatgtaataaagAATTTGCTTATAAAGGAAGTTTGAGAGAACATACGAAAATTCATTTGGGTACAGCAAAAAAACgaattcgtaaaaaaaaaattactgtaGGTGATTCTGATATAATCATAAAGTAA
Protein Sequence: MNNEICRICKNTNITEFNSKNIFIAENIEIIEKLLLCANIQLEKEDHLPKFICQDCELELNLAFNFRLKCEQVDAELRELCQIEQVIEFDEIAEYEIPHNFEHNEENEIKKEIRIEFEILREPIDITFENIITDDNNLKYETASSIKSENINDDVNSSRDDTCSNNVIDPISVNEINDKPKEKLEGETKEIGRFVCETCQFTTDLYNNYRLHIKSHGDERFQCEICTNWFKSKCMLKSHLNTTHNKHLNSYTCNQCGKTLSSRRNLRSHISNHNEHYILRQHHKCTICGQNFTRKDNLRTHLKTFHTDVRNYICEVDNCNKIFKSMKGLKNHKLQVHNLHNNELVKKYKKVECSQCNKLFHTNALLKIHLRSHTGEKPFLCNECGKCFSTQSSLNGHTLIHKNLKPHKCDICNVSFRRYNHLKSHRIIHTGEQNNCKKPYLCTECGKSFAFRSPFIIHSLIHKNIKPHKCDICNVSFRQYPHLQAHRTIHTGEKNYKCDLCNKEFAYKGSLREHTKIHLGTAKKRIRKKKITVGDSDIIIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -