Eliv010690.1
Basic Information
- Insect
- Empis livida
- Gene Symbol
- -
- Assembly
- GCA_963932195.1
- Location
- OZ010647.1:38258709-38262915[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.12 7 7.5 1.6 1 23 151 173 151 173 0.95 2 13 1.5e-06 8.9e-05 22.9 2.2 2 23 180 202 179 202 0.97 3 13 0.065 3.9 8.3 3.2 1 23 208 231 208 231 0.94 4 13 5.9e-07 3.6e-05 24.1 0.4 1 23 237 259 237 259 0.98 5 13 0.0039 0.23 12.1 3.4 1 19 264 282 264 284 0.95 6 13 0.0023 0.14 12.8 0.3 1 23 292 314 292 314 0.98 7 13 0.095 5.7 7.8 1.1 1 23 441 463 441 463 0.95 8 13 6.1e-07 3.7e-05 24.1 0.4 2 23 470 492 469 492 0.96 9 13 0.065 3.9 8.3 3.2 1 23 498 521 498 521 0.94 10 13 8.4e-07 5.1e-05 23.7 0.5 1 23 527 549 527 549 0.98 11 13 0.00095 0.058 14.0 0.5 1 19 554 572 554 574 0.95 12 13 0.00049 0.029 15.0 0.4 1 23 582 604 582 604 0.98 13 13 0.0039 0.23 12.1 0.2 1 23 610 633 610 633 0.96
Sequence Information
- Coding Sequence
- ATGGCTTTGGATACTTACATGGCAAGTGAAAgtgaattacaaattataaaagaggaaaattgcataaaatttggTGAAATAGTATTATCGGATGATgaagcaTTTCTAACAAGTACTACTGATTTAGAAAAAGTAGAAGATAATTTGTTGTCTcgtttaaatgtaaaatttgatataacaAGTGTTGATtccaaaaatgtaaatattccTGAACTAAGTAATGAAGATCATTCATCAATTAACAACCAAGAGACAGACAGTTCcataaattacgaaaaaagtGAAGTTGTACTATCAAATCCAACATCACTGCAAAATGGATgcgaagaaaatataattaaacctGTAAaggaaaatcaaaaaaaaaaaattccacatAATTCTAAGAAAACTGTAGAACgagtaaatagaaaaaataaacacttcAAGAAAGACACTAGTAAAACTACATTTAACTGTGACTATTGTAACGCAGAGTTTACAACCGAATTGCGTAAACAAAGACATGAAAAATCACATACTGGTCATCCACCTGTCCAATGTGCTGAATgtccaaaaatttttaaaacaaaaaaaaatttaaaacatcatATAAAACGAGAACATTTAGGTATACGTGAACATAAATGTGATTATTgtgaaaaaagattttatgtaaaacttgaaaaaatttctCACGAACGATCACAGCATACTAACGAAAAACCatttatttgtgaaatatgtGGTAAAGGTTTTCGTTTTCAACCAACGTTAAATACTCATATGCAAACTCATTATGAACCAAAATATGAATGtgataaatgtaataaaaaatttcatcttaAAGCACATTTTACGCGACATGAAATTTGtcatagtaatttaaaaccaTATTCATGTGACATATGTTCAGCAAATTTTCCACGTTTAATGGCTTATAAAACACATTTAAAATTGCATTCGGAAATAGAAGCAATAAAAGAAGCATTTCTAACAAGAGCTACTGATTTAGAAAAAGTAGAGGATGATTTGTTTCCTAGTTTAAATGTAAGATTTGGAGTAACAAGTGCTGAtggaaaaaatttagatattccAGAACTAAATAATGAAGATCATTCATCCATTAACAGTCAAGACACAAATActtcaataaattatgaaaaatatgaagtTTTACTATCAAATTCAACATCACCAAAAAATGTAGTTCAAGAATATATTGATATTGAACCTGTAAAagttaatctaaaaaaaaaaattccacatAATTCTGGCAAAACTGTAGGACAAGTAAATAGGAAAAAGCAACACTTAGAGAAACAGACTGGTAAAACAACATTTAACTGTGACTATTGTAATGCAGAATTTACAACCGAATTGCGTAAACAAAGACATGAAAAAATCCATACTGGTCATCCTCCTATCCAATGCGCAGATTgtccaaaaattttcaaaacaaaagtaaatttgaaaaatcatataaaaagaGAACATTTAGGCATACGTGAACATAAATGTGATTATTgtgaaaaaagattttatgtaaaactggaaaaaatttCTCACGAAAGATCACAGCATACTAACGAAAAACCatttatttgtgaaatatgtGGAAAAGGATTTCGTTTTCAACCAAAGTTAAACACTCATATGCAAACGCATTATGATCCAAAATATGAATGCGATAAatgtaataagaaattttatcttaaagcAAATTTAAAAGGGCACGAAATTTGtcatagtaatttaaaaccaTATTCATGTGAAATATGTTCAGCAAATTTCCCACGTTTAAGAGCTTATAAAAGACATTTACAACTACACTCGGatattaaagattatatttgtaaattatgtggtaaagatttttatgatatacCGAGAATAAATAGTCATATGAAATCTGCACACAAAAcgcaatataataaaacaaatattctaAGAAGATCACAAATGAAGGAAGATGATTTGGAAAATGATTGGATGTAA
- Protein Sequence
- MALDTYMASESELQIIKEENCIKFGEIVLSDDEAFLTSTTDLEKVEDNLLSRLNVKFDITSVDSKNVNIPELSNEDHSSINNQETDSSINYEKSEVVLSNPTSLQNGCEENIIKPVKENQKKKIPHNSKKTVERVNRKNKHFKKDTSKTTFNCDYCNAEFTTELRKQRHEKSHTGHPPVQCAECPKIFKTKKNLKHHIKREHLGIREHKCDYCEKRFYVKLEKISHERSQHTNEKPFICEICGKGFRFQPTLNTHMQTHYEPKYECDKCNKKFHLKAHFTRHEICHSNLKPYSCDICSANFPRLMAYKTHLKLHSEIEAIKEAFLTRATDLEKVEDDLFPSLNVRFGVTSADGKNLDIPELNNEDHSSINSQDTNTSINYEKYEVLLSNSTSPKNVVQEYIDIEPVKVNLKKKIPHNSGKTVGQVNRKKQHLEKQTGKTTFNCDYCNAEFTTELRKQRHEKIHTGHPPIQCADCPKIFKTKVNLKNHIKREHLGIREHKCDYCEKRFYVKLEKISHERSQHTNEKPFICEICGKGFRFQPKLNTHMQTHYDPKYECDKCNKKFYLKANLKGHEICHSNLKPYSCEICSANFPRLRAYKRHLQLHSDIKDYICKLCGKDFYDIPRINSHMKSAHKTQYNKTNILRRSQMKEDDLENDWM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -