Basic Information

Insect: Empis livida
Gene Symbol: -
Assembly: GCA_963932195.1
Location: OZ010648.1:14169982-14180155[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 7.1e-07 4.3e-05 23.9 1.6 2 23 182 203 182 203 0.97

2 11 3.2e-07 1.9e-05 25.0 0.5 1 23 209 231 209 231 0.98

3 11 5.3e-07 3.2e-05 24.3 0.6 1 23 237 259 237 259 0.98

4 11 1.7e-05 0.001 19.6 0.9 5 23 271 289 265 290 0.91

5 11 9.7e-05 0.0058 17.2 2.9 1 23 295 317 295 317 0.97

6 11 4.8e-05 0.0029 18.1 3.6 1 23 323 346 323 346 0.98

7 11 0.4 24 5.8 1.6 1 23 352 374 352 374 0.95

8 11 1.3e-05 0.00081 19.9 0.7 1 23 379 401 379 401 0.99

9 11 0.00038 0.023 15.3 0.7 2 23 408 432 407 432 0.96

10 11 6.1e-05 0.0037 17.8 0.2 2 23 575 597 574 597 0.93

11 11 3.4 2.1e+02 2.9 5.8 1 23 622 645 622 645 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	7.1e-07	4.3e-05	23.9	1.6	2	23	182	203	182	203	0.97
2	11	3.2e-07	1.9e-05	25.0	0.5	1	23	209	231	209	231	0.98
3	11	5.3e-07	3.2e-05	24.3	0.6	1	23	237	259	237	259	0.98
4	11	1.7e-05	0.001	19.6	0.9	5	23	271	289	265	290	0.91
5	11	9.7e-05	0.0058	17.2	2.9	1	23	295	317	295	317	0.97
6	11	4.8e-05	0.0029	18.1	3.6	1	23	323	346	323	346	0.98
7	11	0.4	24	5.8	1.6	1	23	352	374	352	374	0.95
8	11	1.3e-05	0.00081	19.9	0.7	1	23	379	401	379	401	0.99
9	11	0.00038	0.023	15.3	0.7	2	23	408	432	407	432	0.96
10	11	6.1e-05	0.0037	17.8	0.2	2	23	575	597	574	597	0.93
11	11	3.4	2.1e+02	2.9	5.8	1	23	622	645	622	645	0.95

Sequence Information

Coding Sequence: atggagaGTATTTGTAGATTGTGTTTTCAACCCGCTGCGttatttcaaGTTCCAGGATATAATTTACCAACATGTGTCAAATGTTCAGAACATTTAACAACAAATGGTTTATCagcaaatttttatcaaacaaTACGTCAAGATTTAGCAGCACAACAGCAACCAGCTAATTCAGTTGTTGTAACAACAGGaagtggtggtggtggtggtggtggtggtggttcaacaacaaataatattcaagttcaacaacaacaacagcaacaacaaactaataataataataataataataatcaacaaCAGCAAACATCATCAGCATCTAGACAAGAAcaacaaaatcataataatagtGATAATCATACAAGTACACAACAAGCAACTACAataATTAATCAAGCTTTAAATTCTGTTGCTAATCAAAACggcaacacaaaaaaatctagtggtggtggtggtggtggtaataATACAACAATGTCATTTGATTTGGAAAAAACAATGCAACATCTTGAtgttgatttattatttaacgaAGAAGGATCATGTCCATTATgttcaaaaacattttcaagaaaatcatCACTTTTAACTCATATACGTAATCATTCTGCTGAGCGGAAATATGTTTGTACATATTGTCAAAAAGgctTTACTCAAGCCGCTAATTTACGAAATCATGAACGTATACATACAAATGACCGACCGTATATTTGTGTTGATTGTGGAAAATCATTTACACaaataacaaatttaaataatcatagaAGACTGCATACTGGTGAACGGCCATTTGTTTGTATTGAAACTGAATGTGGAAGATCATTTGCtcaagtaACTAATTTGAATAATCATATGAAAACTCATCATAAAGTTCAACAATATTGCTGTAATCAGtgtccaaaaaaatttacccaaGTGACATCTTTAAATCAACATTTACAGGCTCATGCTGGTATAACGGGTTATTACTGTCCAAGATGTCCAGAGAAAACATTTAAACAACAATCGCAGCTTCATACACATATGAAATCACATGGTTTGGCATTTCCTTACGAATGTATTAAATgtgatgaaaaatttttacaacaagCACATTTAGATCAACACAACAAAATGCATGacgaattcaaatttaaatgtgACATGTGCCCGAGCTCTTTCAATCAGGAGGGACTACTAAAGAAACATATACAAAGACATATCGAAGGAAGgtaTATAACATGTCCGGTAGCTAATTGTAATCAAAGCTTCGCGGTTAAACAACATTTATCGAAGCATCTTCTAACTCGACATTCTCACAGTGAGCTTCCGCCACCGAAACGATCGAAAAAATCCCATCAAGTTGTTCAGGTTGGACATCAAGGTCAACAGCAAACGATGCAAGGTATGGTTGGTCATCAAATTACAACATTAACAACACCTGGTCATGGTCAACgtggACGTCCAAAGAAGAATAAAaatcaacagcaacaacaacagaatgccataaataatgtattaattcaggatcaacaacaaaaaaataatatgcaaGTTGGTACAACAATTCAATTGAATCATatgcaacaacagcaacaacaacaggCCGCCGCAACAGCTGCTGCTGTAATAgcacaacatcaacaacaaaatggAGAAATATCAGGGGGCCATATTAAAACGACAAATAATGATGAACAAACTAATAGCCATCAAGTTGATACACAAAATGatgatttaaaatgtaatgACTGTGGATTGATGTTCCCAACTGCAAATGATTTGAGAGAACATATATTCTATAAACATCCTGAAAGGAGATTTATGCAGGCAATATTAGAAGAAAACAGATATCTTATGAGAATACAAACTCAACAAAACTTCGTTTGCAATCTATGCTGTCATGTATTTAAATCTCATTTAGCATTAGTCCGACATACAGCTAAATTTCATGGACAactattgtaa
Protein Sequence: MESICRLCFQPAALFQVPGYNLPTCVKCSEHLTTNGLSANFYQTIRQDLAAQQQPANSVVVTTGSGGGGGGGGGSTTNNIQVQQQQQQQQTNNNNNNNNQQQQTSSASRQEQQNHNNSDNHTSTQQATTIINQALNSVANQNGNTKKSSGGGGGGNNTTMSFDLEKTMQHLDVDLLFNEEGSCPLCSKTFSRKSSLLTHIRNHSAERKYVCTYCQKGFTQAANLRNHERIHTNDRPYICVDCGKSFTQITNLNNHRRLHTGERPFVCIETECGRSFAQVTNLNNHMKTHHKVQQYCCNQCPKKFTQVTSLNQHLQAHAGITGYYCPRCPEKTFKQQSQLHTHMKSHGLAFPYECIKCDEKFLQQAHLDQHNKMHDEFKFKCDMCPSSFNQEGLLKKHIQRHIEGRYITCPVANCNQSFAVKQHLSKHLLTRHSHSELPPPKRSKKSHQVVQVGHQGQQQTMQGMVGHQITTLTTPGHGQRGRPKKNKNQQQQQQNAINNVLIQDQQQKNNMQVGTTIQLNHMQQQQQQQAAATAAAVIAQHQQQNGEISGGHIKTTNNDEQTNSHQVDTQNDDLKCNDCGLMFPTANDLREHIFYKHPERRFMQAILEENRYLMRIQTQQNFVCNLCCHVFKSHLALVRHTAKFHGQLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00644401;
90% Identity: iTF_00644401;
80% Identity: -