Basic Information

Insect: Empis livida
Gene Symbol: -
Assembly: GCA_963932195.1
Location: OZ010645.1:50532196-50535631[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00014 0.0084 16.7 1.5 1 23 10 33 10 33 0.93

2 16 0.088 5.3 7.9 0.3 1 23 38 61 38 61 0.90

3 16 0.033 2 9.2 0.1 3 23 70 90 69 90 0.95

4 16 0.0038 0.23 12.2 3.4 1 23 112 134 112 134 0.96

5 16 9.7e-05 0.0059 17.2 1.6 2 23 146 168 146 168 0.92

6 16 1.8e-05 0.0011 19.5 2.6 1 23 174 197 174 197 0.98

7 16 8.1e-05 0.0049 17.4 1.5 2 23 203 224 203 225 0.95

8 16 0.36 22 5.9 0.5 1 17 231 247 231 248 0.86

9 16 0.00041 0.025 15.2 1.8 2 23 308 328 307 328 0.97

10 16 0.00012 0.007 16.9 1.6 1 23 358 381 358 381 0.95

11 16 0.016 0.98 10.2 4.7 1 23 386 409 386 409 0.96

12 16 0.00086 0.052 14.2 0.1 3 23 417 437 416 437 0.94

13 16 6.3e-06 0.00038 20.9 1.7 1 23 460 483 460 483 0.94

14 16 0.00089 0.054 14.1 3.6 1 23 489 512 489 512 0.97

15 16 0.00012 0.0071 16.9 5.9 1 23 517 539 517 540 0.95

16 16 0.04 2.4 8.9 0.4 1 12 546 557 546 558 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00014	0.0084	16.7	1.5	1	23	10	33	10	33	0.93
2	16	0.088	5.3	7.9	0.3	1	23	38	61	38	61	0.90
3	16	0.033	2	9.2	0.1	3	23	70	90	69	90	0.95
4	16	0.0038	0.23	12.2	3.4	1	23	112	134	112	134	0.96
5	16	9.7e-05	0.0059	17.2	1.6	2	23	146	168	146	168	0.92
6	16	1.8e-05	0.0011	19.5	2.6	1	23	174	197	174	197	0.98
7	16	8.1e-05	0.0049	17.4	1.5	2	23	203	224	203	225	0.95
8	16	0.36	22	5.9	0.5	1	17	231	247	231	248	0.86
9	16	0.00041	0.025	15.2	1.8	2	23	308	328	307	328	0.97
10	16	0.00012	0.007	16.9	1.6	1	23	358	381	358	381	0.95
11	16	0.016	0.98	10.2	4.7	1	23	386	409	386	409	0.96
12	16	0.00086	0.052	14.2	0.1	3	23	417	437	416	437	0.94
13	16	6.3e-06	0.00038	20.9	1.7	1	23	460	483	460	483	0.94
14	16	0.00089	0.054	14.1	3.6	1	23	489	512	489	512	0.97
15	16	0.00012	0.0071	16.9	5.9	1	23	517	539	517	540	0.95
16	16	0.04	2.4	8.9	0.4	1	12	546	557	546	558	0.92

Sequence Information

Coding Sequence: ATGCATAACAAAACtcagcataaaatatttttatgtaaaatttgcGATAAATCCTTTTCGACTGCAAGAAAACAAAGAgctcatatatttaaaatgcatGATAGAACTGgatataattgtaatatttgcGAACGtgtttttttatatcctaATATACTTAAACGGCATCTGGAATATGTGCATTCAAAGAATACCCCTAAAGCAATTTGTGATATATGTGGAAAACTGTTGAAGAATGAAAGcgttttattaaatcatagaGCATTAcattttaggaaaaaaattaataaagatgatacaaattcaaaacaaataaaatctgAACTGAATTCTTTTAAATGCCCTTTTTGCTCATTAAAGTTTCGTAATttatttggtttgaaaaatcatTCGAAATTTCAtcgaaaagataaaaatagtgaactttataaaaatgtttgtaaattttgtaatcaacGATTCAAAAGATCAGATCATTTAGAATTGCACATAGATTTAGTACATATAAAGAATTTACCATTTACATGTTCGTATTGTTCAAAAAGATTCCCCAAACAGTACGTTCTAAATCAGCATATTAGAAGAACGCATActGAAGGTCCTCGAGAATGCCCATATTGTAACAAACCATATTTATCACGAAGTTCTTTAAATCgacatattaaattacatcatttaaaggaaaagaattttaaatgtgATATATGTTTAGAAGCATTTTCTACAGTTCATAAATACCaaaaaaatattgatttaaataccagttctgaaatattcaaatccaaaatcttaaaaatggAAGATATTGATAGCAGTTCACATCTGTGGAGTAGAAGTAATGATGATTGTTCTTCGAGTGAAGATGAAaacgataaaatatttaaagtatcaAAACCTAAAGATAAGAAATCCGATCGTATAAAGTGCAAAATTTGTCGTGTAATTTTCCGTTCaagcaattatttaaaacatatgaAAAAACATCGTCCGTCAATTTTATCGGAATGTACGATATGTAAGAAACTAGTAGACGAAATAGAAattcataaattgaaaaaacataaaataaaatttgtttgtaaagATTGTGGAGAATcTTTCGATAATCGTCAGAAATATACAATTCATCGTTATCGAAATCACGACAAACCACAACATGTTTGTAATATTTGTCAAAAATcatatatttttttatatcgtcTTAAACAACACGAAAAAATTTGCCATTCGAATGATGCCAATGCAATATGTGATATTTgtggaaaaacttttaaaaatccaaatattttagCTGGTCATAGAGCTACACATATTATAGAAcggaaaattcataaaaatgatatCGATTCAAAACAAATGTCTTCTGAAATTAATACATTTCAATGCCCATATTGTTCTCAACGTTTTAATAGATCTGATCATTTACAGTTACATTTAGATTTAgttcatttgaaaaatttaccatttaCATGTAAATTTTGCTCAAAGAAATTTCCGAAACAGTACGTTCTAAATCAGCATGTTAAGCGACGTCatgAGGAAACTTCCCATGTATGtcaatattgtaaaaaaaaatatgcatttAGAGTTTCACTTACACGTCATATTAGAAGTCATCATTTGATGGAAAAACGATTTAAATGTGATATATGTGGCGAATCATTTATTACTGGTATTCAATGtcaaagtaattaa
Protein Sequence: MHNKTQHKIFLCKICDKSFSTARKQRAHIFKMHDRTGYNCNICERVFLYPNILKRHLEYVHSKNTPKAICDICGKLLKNESVLLNHRALHFRKKINKDDTNSKQIKSELNSFKCPFCSLKFRNLFGLKNHSKFHRKDKNSELYKNVCKFCNQRFKRSDHLELHIDLVHIKNLPFTCSYCSKRFPKQYVLNQHIRRTHTEGPRECPYCNKPYLSRSSLNRHIKLHHLKEKNFKCDICLEAFSTVHKYQKNIDLNTSSEIFKSKILKMEDIDSSSHLWSRSNDDCSSSEDENDKIFKVSKPKDKKSDRIKCKICRVIFRSSNYLKHMKKHRPSILSECTICKKLVDEIEIHKLKKHKIKFVCKDCGESFDNRQKYTIHRYRNHDKPQHVCNICQKSYIFLYRLKQHEKICHSNDANAICDICGKTFKNPNILAGHRATHIIERKIHKNDIDSKQMSSEINTFQCPYCSQRFNRSDHLQLHLDLVHLKNLPFTCKFCSKKFPKQYVLNQHVKRRHEETSHVCQYCKKKYAFRVSLTRHIRSHHLMEKRFKCDICGESFITGIQCQSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -