Basic Information

Insect: Empis livida
Gene Symbol: -
Assembly: GCA_963932195.1
Location: OZ010649.1:21672645-21675879[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 6.6 4e+02 2.0 8.3 1 23 19 42 19 42 0.91

2 16 0.0045 0.27 11.9 1.2 1 23 45 68 45 68 0.93

3 16 0.00038 0.023 15.3 2.9 2 22 77 97 76 97 0.94

4 16 0.0001 0.0062 17.1 0.7 1 23 105 127 105 127 0.96

5 16 0.5 30 5.5 1.0 1 23 133 155 133 155 0.97

6 16 0.00012 0.0075 16.8 0.9 1 23 161 183 161 183 0.98

7 16 0.71 43 5.0 0.6 1 22 189 210 189 210 0.87

8 16 1.3 78 4.2 1.1 9 23 365 380 363 380 0.91

9 16 1.5e-07 9.2e-06 26.0 0.7 1 23 401 423 401 423 0.99

10 16 0.00056 0.034 14.8 0.4 2 23 432 454 431 454 0.94

11 16 0.00026 0.016 15.8 0.1 2 23 459 481 458 481 0.94

12 16 0.0011 0.063 13.9 0.1 1 20 497 516 497 518 0.93

13 16 1.1e-05 0.00065 20.2 0.2 1 23 526 548 526 548 0.98

14 16 3.8e-05 0.0023 18.4 0.3 1 23 554 576 554 576 0.96

15 16 1.3e-06 7.8e-05 23.1 1.6 1 23 582 604 582 604 0.99

16 16 0.0099 0.6 10.8 2.9 1 23 610 632 610 632 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	6.6	4e+02	2.0	8.3	1	23	19	42	19	42	0.91
2	16	0.0045	0.27	11.9	1.2	1	23	45	68	45	68	0.93
3	16	0.00038	0.023	15.3	2.9	2	22	77	97	76	97	0.94
4	16	0.0001	0.0062	17.1	0.7	1	23	105	127	105	127	0.96
5	16	0.5	30	5.5	1.0	1	23	133	155	133	155	0.97
6	16	0.00012	0.0075	16.8	0.9	1	23	161	183	161	183	0.98
7	16	0.71	43	5.0	0.6	1	22	189	210	189	210	0.87
8	16	1.3	78	4.2	1.1	9	23	365	380	363	380	0.91
9	16	1.5e-07	9.2e-06	26.0	0.7	1	23	401	423	401	423	0.99
10	16	0.00056	0.034	14.8	0.4	2	23	432	454	431	454	0.94
11	16	0.00026	0.016	15.8	0.1	2	23	459	481	458	481	0.94
12	16	0.0011	0.063	13.9	0.1	1	20	497	516	497	518	0.93
13	16	1.1e-05	0.00065	20.2	0.2	1	23	526	548	526	548	0.98
14	16	3.8e-05	0.0023	18.4	0.3	1	23	554	576	554	576	0.96
15	16	1.3e-06	7.8e-05	23.1	1.6	1	23	582	604	582	604	0.99
16	16	0.0099	0.6	10.8	2.9	1	23	610	632	610	632	0.98

Sequence Information

Coding Sequence: ATGAATCTAATACAAAAAGAGTTACCTGCAAAGATGCATAAACCACCAGGtggatttttttgtaaatattgtaattttcgtTGCTGTCATGatgttaaattagaaaaacataaagaagAAGCCCAtaagGAATTTCTATGTAGACTTTGTAAAGTTACGTTTGAAACTAAAGAATCTTATATTAATCATATTAAACAACAACATGATGGCCGAGATAAAGAATATAAAGTTTGTGAACATTGTGGCCGTCAATTTAGATATTCTGAACATTTAAActatcataaaaaaacaaattgtcaaacaatatttccatttaaatgtGTTGAATGTGGAAAAAGTTTTCGATCAAAagGAATTTTAAAAACCCATAGTTTAATTCATAGCGgtgaaaaaagatttaattgtACATTTTGTCCAATGGGTTTTATATGTAAAGCTCAAGTGATTGTTCACGAAAGAAAGCATACTGGTGAAAAACCTTATAAATGTGaaattTGTGCAAAAGCTTTTGCACATCGTGAAAGTTTAGTCACACATTCGACAACACATACAGGTCTGAAACCATATTTATGTGAATATTGTGATGCACGTTTTTCATGTGTATCTAGTATATTAGCTCATCGAAGGACACGGCCAGATACTTGTGGTTTACCCCAATATTGTACCAAATTAGCAAAAGCTTGTCCAAGATCAAGTGTACGCTTACATCAACAACAAACAGAAACTAAAAGAAATGATATTGAAATTAAGGTAGAATTAGAAACAAATTGTATACAAGATAATACCAATGATCTTATAAGAGAAATAATCGAAATCGGCGATGacgtaaaaacagaaaattattatccaGTAGAtGACAGTGAAAGTAATGATACATTTTTAGATTGTTTAAGTGTGAAAGATAATAAATCTGATAGTGAAGATAAACTGATTATGAGAAATGAAAGCAAATTATGCGTTAAACCTATTGTGTACAAAAATACTGGGCATAAATTAACGAAATTAGAGCTAAATCACAAAAGATACCAAAGATCTACCAGTAATCATAAaagcgaaaatatttttgaatgtaTTGAATGTATTCATAAACAGCAATTCCGTCGAAAAATTAGTTATGAAAAACATTTACGTAACCGGCATAAAAAGActgataatgaaataattgaaatattaagaataaaaaatcagAAACCATCAAATTATTCATGTAAAATATGTGGAAAATCATTTACATATCCTAAACCGCTTAATCAACATATACAGACACatgGTATTGACGgaaacttaattataaaatgcaaaacttgtacaaaatattttgctacGAAAGAAGATTTACTCGTACATGCTGAAAAAGAACATAAACATATACTTACTTGTTTAATATGTGATAAAATGTACAGAGATATAAGTGCTCTACAAGCACATAACCGTTATGCTCATACAGAACGTGATAAAACTAATAtgaacccaaaaaaaaaatatacttttatttgtaataagtGTGGTAAAATTTTGTCtagtaaaaattcattaattagtCATGAATTATCGAAATGTGGTACTGAATATTTGCACAAATGTGAAGAATGTGGTAAAGCTTTGTCTTCGCCGGCAGCACTCAAAACTCATACAATGATTCACAGAGGAGAATTACCATTTTTATGTCCATATTGTTCAAAAGGTTTTCGCACTAAAGCACCAATGATTGTACATCAAAGAATGCACACGGGAGAGAAACCTTTTCAATGTACTtATTGTGAAAAATCATTTGCATACcgagaaaatttattcattcatTTATCTACTCATACGGGTATAAAACGATATATGTGTACAACATGTAGTGAACGATTTTCATGTATTTCTGGATTAAAAAATCATTGGAGAACTCATGCTGACACTTGTGGTTCTGATCCAAATCGAACTACAAAAGCAATTGGTGAATTTGTGGGATATCGTAAAGGACAATTagaacataagaaaaaaacaatataa
Protein Sequence: MNLIQKELPAKMHKPPGGFFCKYCNFRCCHDVKLEKHKEEAHKEFLCRLCKVTFETKESYINHIKQQHDGRDKEYKVCEHCGRQFRYSEHLNYHKKTNCQTIFPFKCVECGKSFRSKGILKTHSLIHSGEKRFNCTFCPMGFICKAQVIVHERKHTGEKPYKCEICAKAFAHRESLVTHSTTHTGLKPYLCEYCDARFSCVSSILAHRRTRPDTCGLPQYCTKLAKACPRSSVRLHQQQTETKRNDIEIKVELETNCIQDNTNDLIREIIEIGDDVKTENYYPVDDSESNDTFLDCLSVKDNKSDSEDKLIMRNESKLCVKPIVYKNTGHKLTKLELNHKRYQRSTSNHKSENIFECIECIHKQQFRRKISYEKHLRNRHKKTDNEIIEILRIKNQKPSNYSCKICGKSFTYPKPLNQHIQTHGIDGNLIIKCKTCTKYFATKEDLLVHAEKEHKHILTCLICDKMYRDISALQAHNRYAHTERDKTNMNPKKKYTFICNKCGKILSSKNSLISHELSKCGTEYLHKCEECGKALSSPAALKTHTMIHRGELPFLCPYCSKGFRTKAPMIVHQRMHTGEKPFQCTYCEKSFAYRENLFIHLSTHTGIKRYMCTTCSERFSCISGLKNHWRTHADTCGSDPNRTTKAIGEFVGYRKGQLEHKKKTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -