Eliv008211.1
Basic Information
- Insect
- Empis livida
- Gene Symbol
- -
- Assembly
- GCA_963932195.1
- Location
- OZ010647.1:2714228-2719021[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 2.1 1.3e+02 3.5 1.3 2 23 184 205 183 205 0.83 2 23 1.1 66 4.4 0.4 2 23 212 234 211 234 0.90 3 23 0.033 2 9.2 1.3 1 23 282 305 282 305 0.89 4 23 4.3e-06 0.00026 21.4 2.3 2 23 311 333 310 333 0.97 5 23 0.0017 0.1 13.3 1.4 3 23 343 363 341 363 0.96 6 23 1.1e-05 0.00066 20.2 3.5 1 23 369 391 369 391 0.99 7 23 2.5 1.5e+02 3.3 0.2 1 10 398 407 398 420 0.89 8 23 0.03 1.8 9.3 1.0 2 23 432 453 431 453 0.96 9 23 0.0002 0.012 16.2 0.7 1 23 459 481 459 481 0.98 10 23 0.00021 0.013 16.1 1.0 2 23 699 720 698 720 0.97 11 23 0.0002 0.012 16.2 0.3 1 23 764 786 764 786 0.96 12 23 0.0019 0.12 13.1 2.0 1 23 831 853 831 853 0.98 13 23 1.4 85 4.1 0.8 1 23 900 923 900 923 0.83 14 23 0.0014 0.082 13.6 1.3 1 23 960 982 960 982 0.98 15 23 2.6e-05 0.0016 19.0 0.7 1 23 991 1015 991 1015 0.97 16 23 0.00081 0.049 14.3 2.0 1 23 1022 1044 1022 1044 0.98 17 23 0.00067 0.04 14.5 0.4 1 23 1049 1071 1049 1071 0.97 18 23 0.012 0.72 10.6 3.4 1 23 1078 1101 1078 1101 0.97 19 23 0.0057 0.35 11.6 3.1 1 23 1195 1217 1195 1217 0.98 20 23 0.045 2.7 8.8 4.0 1 23 1222 1244 1222 1244 0.96 21 23 2.4e-05 0.0015 19.1 3.0 1 23 1253 1275 1253 1275 0.99 22 23 6.2e-05 0.0037 17.8 2.0 1 23 1281 1303 1281 1303 0.98 23 23 0.028 1.7 9.4 2.6 1 23 1309 1332 1309 1332 0.97
Sequence Information
- Coding Sequence
- ATGAAGCATAGTAATTGCAATGAGTATTTGATTGCAGTTGAAGCTGAAGaagaaagtcccaaacaaataaaaagtgaaaaaaattatgatgaattTACTACAGATGAAAATGTTAATTGTATAATTCCCGCAATTGTACAAGTGGCAAATAccgaagaaataaaaagtgaaaaaagtAAAGAAGACTTGATTCAAGAtgatgaaaattgtttatttgaaGATATTATAGAAGTATCAAATACAGATgatattaaaactgaaaaaattaaaaaagaaattatagaaGATGAagatgaaaattgtataattccAGCAATTGTAGAATTAACAAATACAGaagaaattaaaactgaaaaaaatatggtagAATTTAGTGAAGATGAAGATGAAAATTGTACATTTCAAGATATTTTAGAAGCagctagaaaatttttatcaattaatttaaatccaaaaattaataatataattgaaactGTAAATTTAACCAATGATTATGATCAAAGTGTACGAAGTGAAAATGCAAAAAGTATAAATCGTGAAGAAATGAAATGTAATTTCTGTAATAAAGTATATTCATGTTTACCAATATTACGTGAACATGTTCGTATACATAAAGGTGATCGTATATTATCATGTGATATATGTAATCGTGGTTTTTTACGTGTTGGTTATTTAgattcacataaaaaattatttcattcaactgatagtatattaaaaataccagaaaatgataaatataatGATGATAAAACAATAGAatgtataatatgtaaaaaaatattagcaaaaccaacaatattatttgaacatttaaaaatacattatggtgttaaaccatttaaatgtaaatattgtaatttagaatttattagaaaacgTATACTAACATCACATGAAACACAAATTcatgaatttgaattaatgaaatgttcaatatgtaataaaagttttaataatactgataatttaattaaacataaaaaaacttatcatattaatattgataAGGATGATATAATATGCCGTTATTGTAATCAACAATTTGatactaaacaaaaattatcatatcaTCAAAGAATACATGAATttggtgaaaaatttaaatgccatatatgtgataaaaaatttgctaatttttatagtttagaACAACATGAAAATACACAtaaagattatataaaaaaatatcaatgtACAAAATGtccaagaaaatatttaactgaaTTAACAAGATCATTGCATGAATCATCACATTtatacgaaaattttaaaaaacgttataatttaatatgttcaatttgtaataaagaaatgaaaacacGTAAAAGTTTAGCATATCATAAACGTTTACATGAAGTtggtgataaatttaaatgtcatatttgtggtaaaataacagcaaataaatatgtattaggtatacatattaaatcacatttaatgcaaaataataaattaattaaaaaaggaattattaatgaaaatttaactaatgatgttattgataataatacggaaaaccaacataatataaaatataatattaaagaagaTGGAATAGaagaaacaattaaaatagaagataatttattaaatgatttaaatgatGTTAATATTCCagatgaattattaaatagtaCTACAATAGAACAAATACAACAATTTGATTTAGATGATTTAGATGATTTAGAAGAAATGCTTAACTGTCATATTGTGAAAAAACcagatattgaaattaatcaaaaacaaCGAAGAAAATCTATTATACAAGCACATATTATATCATCACCATTAGTTCCTACTAtatctaatataaataatattattcctaataataatattgtaaatcatccaccaattataataaaatctaatacaATTCCCGTAATTCaaacaacaacaccaacaactGAGAATTcatcaataataaaacttttacaaacaCCAACAATTATTCAAACATCTACATCAACAACAACCCTACCATTTATTTTATCACAAGCacaaaaaaatccaattaataataccaatactaataatataaataatacaaataattataaatctaatgataatattataaatttacaatgtcAATATTGTAATCgtgtttttacaaaaattaatgccTTAGATAATCATACACGTACACATACAAATCAAAGAccatataaatgtaattattgtCGTGCAGATTTTTGTTTAGaacaatcaaaaaattatcatgAAAAACGTCATGAAGCTGGTACTTTTAGATCAAAAgcattaaatgaattaaaaaaatttaattgtaattattgtgataattcattttttacatTAGCAGCATTAGAACGTCATAttgaattacataaaaaaaaattaaatacaaataatcttgatgatatatttaaaatatcatgtACAATgtgttcaaaaaaatttctggaaTTAGGTACGAGACGTTATAATAAACATATGATATCACATGGTTTagttaaaacatttaaatgtaaattatgtaataaagaatttttaacagatgaaaatttattacgtcatttaaaatatcataataatcataataaagaACAAAATGATCATCAACAAGAACAAGAAGAAGAACAACAACCACCACAGCAACAAGAACAACAAccaccacaacaacaacaacagctacaaaatcaacaacaacaaaaaccatcacaaatatttaaatgtaattattgtccatcaatattttcattattattaacaaaaaatttacatgaacgtattaaacataataaaggtggtaataaattaataaaatcatcttcatcatcattacaacaacaaaatttatatcgtaataaattaaataatatgaaaataacaaaaaaatctacCACATATAAATGTCaacaatgtaataaaatatttacatcattattaatattaaaaacacatTTACGTATACATTTACCAACatcaaatgataaattattttcttgtacaataaataaatgtccGTTAGTATTTCGTAATAaagatgaattaaaattacatcaaAATACACATATTGATCCattaaaaccatttaaatgtaatatatgctttaaagattttaataaattaactttattaaaagtaCATGAAAATagacataatttaataaaatttaaatgtaatatatgTCCAGCTATATTTAAAGAACGTAAAGAATTACAAGAACATAAAACGATTCATAAAGAAAGTGATAAACCATTTCAATGCAAATTATgtagtaattattttgtatcagGTAgacatttacaaaaacatattaaaataaaacataatactGATAATGgacaattaaataatgaaacatttattaataataaaaatgataagaatgaattaaatattaataatataaaatttattcaaattccAGTGCCAGTAGTTCCAATTAATAGTAGTAAtgataatagtaataatttaataattaatagtaatGAACTATTACAggcaaatataattaataatgaattatcacaagaaaacataattaaaaatgaattattacaagaaaatataaataatatatcaaaTCTAAATGAAAacgaacaaaaatttaaatgtgacatatgttttaaatattttacatctgataataaattacgaattcataaaaaattacatgctataaatccatttaaatgtaatttatgtacaatgcattttaaaactgaagaacgtttaaaaattcataaaacatTACATGATGCTGAAATGCAAGGTAAAGCATTTACATGTGATTTATGTCGTCGtgtatttaaaacaaaaatgaaattattttcacatattAGAACACATTCTAATGCTAGACCATTTTCATGTCCAAACTGTCcattaacatttaaaactaAAGGACATTATAATGAGCACTCGAGAGTTCATTCTGGTGATAAACCATTTAAATGTACGTTTTGTGATATGGAATTTGCTAGATCTAATTATAGATTACAGCATGAGAGAAAATATCATAAtcggaaataa
- Protein Sequence
- MKHSNCNEYLIAVEAEEESPKQIKSEKNYDEFTTDENVNCIIPAIVQVANTEEIKSEKSKEDLIQDDENCLFEDIIEVSNTDDIKTEKIKKEIIEDEDENCIIPAIVELTNTEEIKTEKNMVEFSEDEDENCTFQDILEAARKFLSINLNPKINNIIETVNLTNDYDQSVRSENAKSINREEMKCNFCNKVYSCLPILREHVRIHKGDRILSCDICNRGFLRVGYLDSHKKLFHSTDSILKIPENDKYNDDKTIECIICKKILAKPTILFEHLKIHYGVKPFKCKYCNLEFIRKRILTSHETQIHEFELMKCSICNKSFNNTDNLIKHKKTYHINIDKDDIICRYCNQQFDTKQKLSYHQRIHEFGEKFKCHICDKKFANFYSLEQHENTHKDYIKKYQCTKCPRKYLTELTRSLHESSHLYENFKKRYNLICSICNKEMKTRKSLAYHKRLHEVGDKFKCHICGKITANKYVLGIHIKSHLMQNNKLIKKGIINENLTNDVIDNNTENQHNIKYNIKEDGIEETIKIEDNLLNDLNDVNIPDELLNSTTIEQIQQFDLDDLDDLEEMLNCHIVKKPDIEINQKQRRKSIIQAHIISSPLVPTISNINNIIPNNNIVNHPPIIIKSNTIPVIQTTTPTTENSSIIKLLQTPTIIQTSTSTTTLPFILSQAQKNPINNTNTNNINNTNNYKSNDNIINLQCQYCNRVFTKINALDNHTRTHTNQRPYKCNYCRADFCLEQSKNYHEKRHEAGTFRSKALNELKKFNCNYCDNSFFTLAALERHIELHKKKLNTNNLDDIFKISCTMCSKKFLELGTRRYNKHMISHGLVKTFKCKLCNKEFLTDENLLRHLKYHNNHNKEQNDHQQEQEEEQQPPQQQEQQPPQQQQQLQNQQQQKPSQIFKCNYCPSIFSLLLTKNLHERIKHNKGGNKLIKSSSSSLQQQNLYRNKLNNMKITKKSTTYKCQQCNKIFTSLLILKTHLRIHLPTSNDKLFSCTINKCPLVFRNKDELKLHQNTHIDPLKPFKCNICFKDFNKLTLLKVHENRHNLIKFKCNICPAIFKERKELQEHKTIHKESDKPFQCKLCSNYFVSGRHLQKHIKIKHNTDNGQLNNETFINNKNDKNELNINNIKFIQIPVPVVPINSSNDNSNNLIINSNELLQANIINNELSQENIIKNELLQENINNISNLNENEQKFKCDICFKYFTSDNKLRIHKKLHAINPFKCNLCTMHFKTEERLKIHKTLHDAEMQGKAFTCDLCRRVFKTKMKLFSHIRTHSNARPFSCPNCPLTFKTKGHYNEHSRVHSGDKPFKCTFCDMEFARSNYRLQHERKYHNRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -