Basic Information

Insect: Empis livida
Gene Symbol: -
Assembly: GCA_963932195.1
Location: OZ010647.1:8495619-8496581[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 5.2e-05 0.0031 18.0 3.3 1 23 10 32 10 32 0.99

2 11 0.035 2.1 9.1 0.3 1 23 38 60 38 60 0.97

3 11 6.4e-07 3.9e-05 24.0 1.9 2 23 67 88 66 88 0.96

4 11 1.2e-06 7.5e-05 23.1 4.7 1 23 96 118 96 118 0.97

5 11 1.2e-06 7.2e-05 23.2 0.5 1 23 127 149 127 149 0.99

6 11 9.8e-06 0.00059 20.3 2.8 1 23 155 177 155 177 0.98

7 11 4.5e-05 0.0027 18.2 1.8 1 23 183 205 183 205 0.98

8 11 4.5e-05 0.0027 18.2 0.5 2 23 212 233 211 233 0.95

9 11 7.9e-07 4.8e-05 23.7 3.9 1 23 241 263 241 263 0.97

10 11 2.3e-05 0.0014 19.1 0.2 1 23 269 291 269 291 0.97

11 11 2.9e-06 0.00018 22.0 2.1 1 23 297 320 297 320 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	5.2e-05	0.0031	18.0	3.3	1	23	10	32	10	32	0.99
2	11	0.035	2.1	9.1	0.3	1	23	38	60	38	60	0.97
3	11	6.4e-07	3.9e-05	24.0	1.9	2	23	67	88	66	88	0.96
4	11	1.2e-06	7.5e-05	23.1	4.7	1	23	96	118	96	118	0.97
5	11	1.2e-06	7.2e-05	23.2	0.5	1	23	127	149	127	149	0.99
6	11	9.8e-06	0.00059	20.3	2.8	1	23	155	177	155	177	0.98
7	11	4.5e-05	0.0027	18.2	1.8	1	23	183	205	183	205	0.98
8	11	4.5e-05	0.0027	18.2	0.5	2	23	212	233	211	233	0.95
9	11	7.9e-07	4.8e-05	23.7	3.9	1	23	241	263	241	263	0.97
10	11	2.3e-05	0.0014	19.1	0.2	1	23	269	291	269	291	0.97
11	11	2.9e-06	0.00018	22.0	2.1	1	23	297	320	297	320	0.98

Sequence Information

Coding Sequence: ATGAATATTCATACTGGTGCCAGACCATATGAGTGCAGTATATGTCCGAAAACATTTCGTTGCAATCAAAATCTTAAAGATCATGAACGTCGTCATAAAGGTGAAGCAAATTTTCCATGtagtttttgtgaaaaacgATTATATTCAAATGGAGAGAAAATTATTCACGAACGCATTCATACTGGTCAAAAACCATGTGTTTGCGATATCTGTGGTAGAGCTTTTACAAGTCAATCAACATTAAAACAACATAAAGAAACACATTCAGCACAacgtatattaaattttcattgtcaAGAatgtgataaatattttacatcaaaaacaaatttaacccgacacattaaattacattttggtATTGAAGAGACAACACATTACCAGTGTCCAcaatgtgaaaaatattttggcagTTCAAGTACATTAAAGgatcatataaatatacatacgGGAGCAAGACCTTACGTTTGTACTTACTGTTCAAAAGCATTCAAATCACGTCAAACATTAAAAATGCATGAAAAAAGGCATACCGGGGATGCTAAATATCCATGTGAGTTATgtgaaaaacgtttttttacATCAACCGAATTGGCTGTACATCATCGTTATCATACTGGTGAGAAACCATGTATTTGTGAGTTATGtggtaaaagttttattaatgcTGGTGCAATGAatgcacataaaaaaaatcatgaagaattaaaatcatatgATCATAAATGTGATCAATGTGAAAAAACATTCACaagtaagaaaaatttaaaaaggcaTTTAGTTGTACATTGTGCTGAAAAACCATTTGCTTGTGAAGAATGCCCAGCAAGATTTACACGACGTGAAGGTTTAGCATCACATAAAAAAACCCATGctgaaattaaagaatttaaatgtaaattttgtgaaaaagaaTTTGCCCAAAGAAGTGTTTTATACAGGCATATGAAAACGgttcattaa
Protein Sequence: MNIHTGARPYECSICPKTFRCNQNLKDHERRHKGEANFPCSFCEKRLYSNGEKIIHERIHTGQKPCVCDICGRAFTSQSTLKQHKETHSAQRILNFHCQECDKYFTSKTNLTRHIKLHFGIEETTHYQCPQCEKYFGSSSTLKDHINIHTGARPYVCTYCSKAFKSRQTLKMHEKRHTGDAKYPCELCEKRFFTSTELAVHHRYHTGEKPCICELCGKSFINAGAMNAHKKNHEELKSYDHKCDQCEKTFTSKKNLKRHLVVHCAEKPFACEECPARFTRREGLASHKKTHAEIKEFKCKFCEKEFAQRSVLYRHMKTVH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -