Basic Information

Insect: Empis livida
Gene Symbol: -
Assembly: GCA_963932195.1
Location: OZ010646.1:32353468-32356679[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00011 0.0067 17.0 0.1 1 23 290 313 290 313 0.96

2 12 0.00048 0.029 15.0 0.4 1 23 321 343 321 343 0.99

3 12 1.6e-05 0.00094 19.7 0.9 1 23 350 372 350 372 0.98

4 12 1.1e-06 6.4e-05 23.3 1.2 1 23 378 400 378 400 0.99

5 12 1.9e-07 1.2e-05 25.7 1.2 1 23 407 429 407 429 0.99

6 12 0.0003 0.018 15.6 0.5 1 23 435 457 435 457 0.93

7 12 4.4e-05 0.0027 18.2 0.3 1 23 463 485 463 485 0.98

8 12 1.8e-06 0.00011 22.6 0.3 1 23 491 514 491 514 0.96

9 12 2.7e-05 0.0016 18.9 2.3 1 23 520 543 520 543 0.96

10 12 0.00045 0.027 15.1 4.0 1 23 549 571 549 571 0.98

11 12 1.4e-05 0.00086 19.8 0.9 1 23 577 599 577 599 0.97

12 12 0.0027 0.16 12.6 0.0 1 21 605 625 605 629 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00011	0.0067	17.0	0.1	1	23	290	313	290	313	0.96
2	12	0.00048	0.029	15.0	0.4	1	23	321	343	321	343	0.99
3	12	1.6e-05	0.00094	19.7	0.9	1	23	350	372	350	372	0.98
4	12	1.1e-06	6.4e-05	23.3	1.2	1	23	378	400	378	400	0.99
5	12	1.9e-07	1.2e-05	25.7	1.2	1	23	407	429	407	429	0.99
6	12	0.0003	0.018	15.6	0.5	1	23	435	457	435	457	0.93
7	12	4.4e-05	0.0027	18.2	0.3	1	23	463	485	463	485	0.98
8	12	1.8e-06	0.00011	22.6	0.3	1	23	491	514	491	514	0.96
9	12	2.7e-05	0.0016	18.9	2.3	1	23	520	543	520	543	0.96
10	12	0.00045	0.027	15.1	4.0	1	23	549	571	549	571	0.98
11	12	1.4e-05	0.00086	19.8	0.9	1	23	577	599	577	599	0.97
12	12	0.0027	0.16	12.6	0.0	1	21	605	625	605	629	0.92

Sequence Information

Coding Sequence: atgaaaacatcaTTTAGTGGATGCGTGGATCTTTTCGATGGATGCGAGtttcaaGACAATGGCAAAGAAGTCTGTTCTGTGTCTACAGTTTTTGAAAGTGCTTTTGCTATGCAGTTGACGGAAAATAGTGTACATTccaaaGTTCTTTGTTCCGAATGCAATGCACTAATTCTGGAGTATGAAGAAATTGAACAACGTTATTGTGAACTAAagtacaaaataattgaagaataCAATAAAACAGctaaaatttatggaattgATTTGGTTGAATATGAAATGTTATCACCCGTAGAGGAAGAATATAATACATATGATGAACATTTCACTAATGAAGAACACGTCGATGATTTAGATGATGATAACGATGATGATCATGAAAGTAATAGTAATTCAGCAGTTCAGCCAacagatttaataaatttttatgtaactaGCGATCtatcagaaaataattttgaaatatcagGAAATGGCGGTAGTATTGGAGAAAATTTAGTGGAAATTGTATCATCtgATGTGCATTATGAGCAAGTAATTGATCATACAAATTCATTGAGCAATGTAAATGATGttcaagaaaatatggaaactaCTTTAGAATTTGTTGAAGATGGACTTGAAAatgctaCAAATGCAGAAGAaatgtttgaaattaaaagtgaaccaatagaaaatatgggacaaaaaagtaaaaagaaaaaagaaataactaaatatattacaacGGATAATTCAAGACCGTCGTTTCAATTTGATGGTGAAAAATATGTATGCCTTTGTTGTGATGAAACGAAAACATTAATTCAAGAATATGATGCAAAATCAATTGGTGttcatttaaaatcaatacaCAATATACGAATATTTGTTTGTGAAACATGTGGTAAAGGTTTTGGCAAGCGTTCAGAATTAAGTGATCATGtagaaaaaattcatattgaTAATGAAAGTGGTGAATTTCAGTGTGAAACATGCCTCAcagtttttccaaatttaggcttatttaaaattcatagaCGTATTCATAATACCATTCAAAAAACATTTGAATGTTCGGTatgtaataagaaatatagttcaaaaaatttacttgatGAACATATGAATATGCATACTGGTGCCCGGCCATTTAAATGTGTTGAATGTTCGAAAGATTTTGCCTCAAAATATACACTTAATGCTCATATGAAAACACATCTAAATCGACCACGACCATATGTCTGTACTGATTGTCCAAAATCATTCTTTAGTGCTCAAAATTTGCAACAACATCAAAAAACTCATTCTGGTGTTAAAGAGTTTTTATGTGATATATGTCAAAAAGCATTTGGTACTGagcataatttaaatgtacataaaGTTGTTCACACAGGTTATAAGCCTTTTATTTGCCGAACTTGTGGTAAGGCATTTGCCAGACGTGCTGAAATTAAAGATCACGAACGAACGCATACAGGTGAAAAACCATTTAGTTGTGATATTTGTGGATTAGCATTTGCTCAACGTTCAAATTTAACAACTCACAAACGAGCAACACATATGAATGATAAACGTTATAAATGTACTGAATGCGATAGAAGTTTTAAAAGACGTCGGCTATTAGATTATCATACAAGAGCATCACATACTGGGGAACGAccatataaatgtaatatgtGCACCTCAAGTTTTGTTTATCCAgaacattataaaaaacatttaaaattacattccGGTATAAAACCTTATTCGTGTGAAGTGTGtggaaaaacatttaatagtAGAGATAATCGGAATGCTCATCGTTTCATTCATAGTGATAAAAAACCTTATGAATGTTTAGTTTGTGGATTAGGATTTATGAGAAAACCACTCTTATATAGCCATATGCAAGCTGTCgGTCATTTAAATGATACAATAATTGTTAATCAAccacaaattaaaaatgatagtGAAACTGTAGaagaattgtttataaattcagAAGATATAATGCTTGATGATGAaagtaatgaaattattttggaagaAGAGCATTTAATTGAACATATTACTGATCATGCCGATTGCTTAGAAGACATTGACAATCAAATTGATGAAGATTCAAAACATATATCAACAAATGAAATTCTAAATGAGGAAGATATTACAGAATTAATAATACCCGGACATATAAAAggtcaacataaaataaaacatgaaGTAGACGATACGTTTCTCGAGTAA
Protein Sequence: MKTSFSGCVDLFDGCEFQDNGKEVCSVSTVFESAFAMQLTENSVHSKVLCSECNALILEYEEIEQRYCELKYKIIEEYNKTAKIYGIDLVEYEMLSPVEEEYNTYDEHFTNEEHVDDLDDDNDDDHESNSNSAVQPTDLINFYVTSDLSENNFEISGNGGSIGENLVEIVSSDVHYEQVIDHTNSLSNVNDVQENMETTLEFVEDGLENATNAEEMFEIKSEPIENMGQKSKKKKEITKYITTDNSRPSFQFDGEKYVCLCCDETKTLIQEYDAKSIGVHLKSIHNIRIFVCETCGKGFGKRSELSDHVEKIHIDNESGEFQCETCLTVFPNLGLFKIHRRIHNTIQKTFECSVCNKKYSSKNLLDEHMNMHTGARPFKCVECSKDFASKYTLNAHMKTHLNRPRPYVCTDCPKSFFSAQNLQQHQKTHSGVKEFLCDICQKAFGTEHNLNVHKVVHTGYKPFICRTCGKAFARRAEIKDHERTHTGEKPFSCDICGLAFAQRSNLTTHKRATHMNDKRYKCTECDRSFKRRRLLDYHTRASHTGERPYKCNMCTSSFVYPEHYKKHLKLHSGIKPYSCEVCGKTFNSRDNRNAHRFIHSDKKPYECLVCGLGFMRKPLLYSHMQAVGHLNDTIIVNQPQIKNDSETVEELFINSEDIMLDDESNEIILEEEHLIEHITDHADCLEDIDNQIDEDSKHISTNEILNEEDITELIIPGHIKGQHKIKHEVDDTFLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00644386; iTF_01297762;
90% Identity: -
80% Identity: -