Basic Information

Insect: Empis livida
Gene Symbol: -
Assembly: GCA_963932195.1
Location: OZ010647.1:2297188-2302480[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 4.2e-05 0.0025 18.3 3.2 2 23 23 44 22 44 0.98

2 19 0.00051 0.031 14.9 0.5 1 23 50 72 50 72 0.94

3 19 1.2e-06 7.3e-05 23.2 2.5 1 23 78 100 78 100 0.99

4 19 0.0073 0.44 11.3 3.5 1 23 105 127 105 127 0.98

5 19 5.2e-06 0.00031 21.2 2.0 1 23 633 655 633 655 0.99

6 19 0.0036 0.22 12.2 0.8 1 23 661 683 661 683 0.98

7 19 8.8e-05 0.0053 17.3 0.2 1 23 689 711 689 711 0.98

8 19 0.11 6.5 7.6 3.2 1 23 718 740 718 740 0.98

9 19 0.00018 0.011 16.4 2.0 1 23 759 781 759 781 0.99

10 19 9.8 5.9e+02 1.4 3.2 1 13 787 799 787 810 0.80

11 19 0.21 13 6.6 0.9 1 23 816 838 816 838 0.95

12 19 2.9e-05 0.0017 18.8 1.8 1 23 844 866 844 866 0.99

13 19 0.00055 0.033 14.8 2.7 1 23 895 917 895 917 0.98

14 19 0.00072 0.043 14.4 1.7 1 23 923 945 923 945 0.95

15 19 5.5e-05 0.0033 17.9 6.0 1 23 951 973 951 973 0.99

16 19 7.8e-05 0.0047 17.5 5.9 1 23 979 1001 979 1001 0.98

17 19 0.00067 0.041 14.5 0.7 2 23 1020 1041 1019 1041 0.97

18 19 0.016 0.96 10.2 2.1 1 23 1047 1069 1047 1069 0.98

19 19 2.4e-07 1.4e-05 25.4 1.1 1 23 1075 1097 1075 1097 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	4.2e-05	0.0025	18.3	3.2	2	23	23	44	22	44	0.98
2	19	0.00051	0.031	14.9	0.5	1	23	50	72	50	72	0.94
3	19	1.2e-06	7.3e-05	23.2	2.5	1	23	78	100	78	100	0.99
4	19	0.0073	0.44	11.3	3.5	1	23	105	127	105	127	0.98
5	19	5.2e-06	0.00031	21.2	2.0	1	23	633	655	633	655	0.99
6	19	0.0036	0.22	12.2	0.8	1	23	661	683	661	683	0.98
7	19	8.8e-05	0.0053	17.3	0.2	1	23	689	711	689	711	0.98
8	19	0.11	6.5	7.6	3.2	1	23	718	740	718	740	0.98
9	19	0.00018	0.011	16.4	2.0	1	23	759	781	759	781	0.99
10	19	9.8	5.9e+02	1.4	3.2	1	13	787	799	787	810	0.80
11	19	0.21	13	6.6	0.9	1	23	816	838	816	838	0.95
12	19	2.9e-05	0.0017	18.8	1.8	1	23	844	866	844	866	0.99
13	19	0.00055	0.033	14.8	2.7	1	23	895	917	895	917	0.98
14	19	0.00072	0.043	14.4	1.7	1	23	923	945	923	945	0.95
15	19	5.5e-05	0.0033	17.9	6.0	1	23	951	973	951	973	0.99
16	19	7.8e-05	0.0047	17.5	5.9	1	23	979	1001	979	1001	0.98
17	19	0.00067	0.041	14.5	0.7	2	23	1020	1041	1019	1041	0.97
18	19	0.016	0.96	10.2	2.1	1	23	1047	1069	1047	1069	0.98
19	19	2.4e-07	1.4e-05	25.4	1.1	1	23	1075	1097	1075	1097	0.98

Sequence Information

Coding Sequence: ATGATTGAACAACCAATTGAAgccttttataataaaattttagaaaagaataaattaaatactaaacaATGTGATACTTGTGGAATGTGCTTTTCATCAGTAACATCATTAAAAAGACATATTATGAAACATACAGGAGAAAGACcatataaatgtGAACATTGCTCAAGGGGTTTTATTCGTCGCCAAGCATTAATATTGCATTTGGGTGCACATTCTggtgaaaaacaatttaaatgtgAACAATGTGATAAAGcatattaCCGAAAAGATGCACTACAACATCATATGAAAGTACATTCTGATAATGTATTTTACTGTagttattgtaataaaaaatttaaaattaattcagaaaaaatttatcatgaaCGAAggcataataatataaacaggAAACGGCCATTTAAATCGcgtaaacagaaaaaattgtCTGCACCAATTACAAAACTAACAGCTACTAAATCAATTCAAGACGAAATACTAGAAATAAAGAAAGAATTAaaaatgtcttcggaaaatAAATCTAAACGGGCACGTTATTGTGTTGCACCGGgttgtaaaaattatgaatgtgTTATGAAAAAGGTCAATGATGGAACTAAAAATGTACAACAGCAAACCATAACATATCATAACTTTCCAACAAAATCAAGCTTAAGAAGTAAatggtttaaatttattggccACCACAAAAATTCTGTTAGCAGTTTAACTTGGCGAACATGGACACTTTGTTCAGAACATTTTGAAGACTCTGAATTTGAGGAAAGTTGTCATTTAGAATGTATTGATGGTATTTACAGACGTTTAAATATCAAACTTAAAAATGGTGctgtgccaacaaaattaaaatcaccaACAGTACAAATACAATTAACAAATGATGAGAATCAAACTGAATTAACAAGCAATTCTATTGATTTTACTACAAGAACAAATTCAACTGATTCAATAATagataatacaataaattcgaatttaaaaaatgaatatagtgaaattgattttgataatgaaacaatttatacagaaattgaagaagattttcattcaaaatgtGGTGAAGTATTCGTAACGCGTAAAgaaCATATATCATTAGATAatgatacaaatataaataatttaaatatcaataatgatattaaaactgaagaaataattaaatcgcCACCAAAATGTACTATTAAAGTACCACTACCATTGCAACATTgtgaaattgttgaaaatgaaGCTGGTAATTTTGAAACTATAAGTTTCTttgatgttgatgatgttcaaaataatgaaaatcaaaatcaaaatttatatgatgAAATAGAATCTAAGAAAGTTACGGCAGATGAGATTAAAGACCGTAAATtggaattacaaaataaaaactttacatCAATACAGAATTCTGaagttaattatattatcGATTTAACTGATGATGATGACAATATTGATAATAGTactggaaataataataataatactgaaaatgataataatattgaaaatattaataacagcAATGAACATATTGATgttaataatgatgatgataaaattgcaattagaAATGAAGCTATTATTGATAGTCGTACTATCGGAATTACCGAATCACAAACTAATAGTAACAAgacaattgaattaaataatgatataattaataatgataatgctaataatattaacagtaaaattaataattcattaaatgaaTCAAatgtaaattctttaaatattagtgATATAGCAAATtcttgtaataattataataatgataatgaaattttaccaGCTGCTTATAATGATAAAGAATTTGTAGAAgcagatgatgatgatgataataatggtAATGTgcatgatgatgatgatgatgattggAATCCAAATAATTGTAAACGCTTTAAATGCCGATATTGtccaaaaacattaaaatcacaatataatttaaccatACATGTACGTAGTCATACTGGCGAGAGACCATTTAAATGTAATGCATGTTCACAAAGTTTTAAATCACAAGCAGTTTTATATAATCATGAGAAGATACATACTGGCGTAAAACCTTTCGAATGTAAAATATGTGGTTTggCATCCACCACACAATATAGTTTAATTGTTCATGAAAAACGTCATGAAACTCaacaaaatcaatataaatgtgcatattgtgaaaaaaaattcttacgATTAAAAAAGAAGGTACTTCATCAGCGTACAcataatattgatattaagCACGAACCAGATGaagaacataatttattaacgaaaaaattcaaatgtgaattttgtttcaaaaccTTAAGTTCACAATATTCATTAATTGAACACCGTCGCATTCACACGGGTGAGAAACCATTTTCATGTAAATTTTGTCCATCATCGTTtcgttcaaaattattaaaaatatgtcatGAACGTAGTACTCATACTGGTGAACGGCCATTTAGTTGTATTTACTGCGAAAAAGCATTTGTGCTAAAGAGTACACGTGATAATCATGAACGAACTCATACTAAAGAAAGAccatttaaatgtaatttatgtgATAAAACATATCGGCAAGCAAGTGCTAAATATATCCATATGAAAACACATTTTCgcccaaaaaatgaaaatagctCAAGAAATACTAGAAGGAGAAATAATTCAGTTCAAAGTAATAGCggtgataataaaattcatcaatgtgaatattgtaaaaaaacattatcatCACAAAATGTATTGAATGAACACCGTCGTATTCACACGGGTGAGAAACCATACTTATGTAAATATTGTCAAAAGGCTTTTCGTGcgaaatcattattattttatcacgAACAAAGTCATACGGGCGTAAAACCATATCAATGTAAATATTGTCACAAAAgattTCGACTGTCGGGTAACATGGCCGCTCATCATCGTACCCATACGGGAGAAAAACCATTCCGTTGTAGTTATTGTGATAAATGTTTTagtcaaaaacaaaatcaaactATACATGAAAAAACACACATACCAGgttataaaaaagtaaatgaaGAAAAAGAGAAAGATAATCGGATATGGAAATGTgatttttgtggaaaaattttattgaataaatatacattaacaAACCATATACGTACCCATACTGGGGAGCGGccatttaaatgtaattattgcCCATCAGCATTTAAATCATTATCACAACATATACAACATGAAAGAATTCATTCTGGACATAAACCATATAAATGTACAGAATGTACTAAAGcttTTGCAACAAAAAGTCAACTAAATACACATTTACGGGCACATGGAactaaaaaatctaaatcaaCAGTTCACAAATGCGATAAATGTGAAAAAggtattttttga
Protein Sequence: MIEQPIEAFYNKILEKNKLNTKQCDTCGMCFSSVTSLKRHIMKHTGERPYKCEHCSRGFIRRQALILHLGAHSGEKQFKCEQCDKAYYRKDALQHHMKVHSDNVFYCSYCNKKFKINSEKIYHERRHNNINRKRPFKSRKQKKLSAPITKLTATKSIQDEILEIKKELKMSSENKSKRARYCVAPGCKNYECVMKKVNDGTKNVQQQTITYHNFPTKSSLRSKWFKFIGHHKNSVSSLTWRTWTLCSEHFEDSEFEESCHLECIDGIYRRLNIKLKNGAVPTKLKSPTVQIQLTNDENQTELTSNSIDFTTRTNSTDSIIDNTINSNLKNEYSEIDFDNETIYTEIEEDFHSKCGEVFVTRKEHISLDNDTNINNLNINNDIKTEEIIKSPPKCTIKVPLPLQHCEIVENEAGNFETISFFDVDDVQNNENQNQNLYDEIESKKVTADEIKDRKLELQNKNFTSIQNSEVNYIIDLTDDDDNIDNSTGNNNNNTENDNNIENINNSNEHIDVNNDDDKIAIRNEAIIDSRTIGITESQTNSNKTIELNNDIINNDNANNINSKINNSLNESNVNSLNISDIANSCNNYNNDNEILPAAYNDKEFVEADDDDDNNGNVHDDDDDDWNPNNCKRFKCRYCPKTLKSQYNLTIHVRSHTGERPFKCNACSQSFKSQAVLYNHEKIHTGVKPFECKICGLASTTQYSLIVHEKRHETQQNQYKCAYCEKKFLRLKKKVLHQRTHNIDIKHEPDEEHNLLTKKFKCEFCFKTLSSQYSLIEHRRIHTGEKPFSCKFCPSSFRSKLLKICHERSTHTGERPFSCIYCEKAFVLKSTRDNHERTHTKERPFKCNLCDKTYRQASAKYIHMKTHFRPKNENSSRNTRRRNNSVQSNSGDNKIHQCEYCKKTLSSQNVLNEHRRIHTGEKPYLCKYCQKAFRAKSLLFYHEQSHTGVKPYQCKYCHKRFRLSGNMAAHHRTHTGEKPFRCSYCDKCFSQKQNQTIHEKTHIPGYKKVNEEKEKDNRIWKCDFCGKILLNKYTLTNHIRTHTGERPFKCNYCPSAFKSLSQHIQHERIHSGHKPYKCTECTKAFATKSQLNTHLRAHGTKKSKSTVHKCDKCEKGIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00643268;
90% Identity: iTF_00643268;
80% Identity: iTF_00643268;