Eliv005207.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Empis livida
Gene Symbol
-
Assembly
GCA_963932195.1
Location
OZ010646.1:15630950-15634341[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 5.5 3.3e+02 2.2 4.5 1 23 56 79 56 79 0.94
2 16 6.6e-08 4e-06 27.1 2.1 1 23 93 115 93 115 0.97
3 16 1.8e-05 0.0011 19.5 1.4 1 23 122 144 122 144 0.99
4 16 0.21 13 6.7 1.8 2 11 151 160 150 173 0.73
5 16 2.2e-05 0.0013 19.2 1.2 1 23 179 201 179 201 0.98
6 16 4e-05 0.0024 18.4 0.4 1 23 207 229 207 229 0.96
7 16 0.00011 0.0068 17.0 0.9 1 23 235 257 235 257 0.98
8 16 1.7e-05 0.001 19.5 1.2 1 23 263 285 263 285 0.98
9 16 0.71 43 5.0 3.3 1 23 340 363 340 363 0.91
10 16 1e-05 0.00062 20.2 1.3 1 23 377 399 377 399 0.94
11 16 2.6e-06 0.00016 22.1 2.5 1 23 406 428 406 428 0.99
12 16 0.091 5.5 7.8 2.7 2 23 435 457 434 457 0.94
13 16 1.1e-05 0.00069 20.1 0.8 1 23 463 485 463 485 0.98
14 16 1.3e-05 0.00078 19.9 0.1 2 23 492 513 491 513 0.95
15 16 0.00011 0.0068 17.0 0.9 1 23 519 541 519 541 0.98
16 16 1.7e-05 0.001 19.5 1.2 1 23 547 569 547 569 0.98

Sequence Information

Coding Sequence
atgaatggAATTGATATTGAATCAATAGTGCCATTAAAAAGTAGTACAAAATGTggtgaattatattttgaaaattcaattgCGCTTGATGAATCACCTATTCTTATATTAGAAGAAATACCACAaccgaaaataattttaacaacagTTCAAAAATCGCTAAAGTATAATTGTAAAAGTTGTAAATTATCATTTCTACATCGAAATAATTGGCTAATACACAGGTATAAAAAACATAgtcgtaaaaataaaaatatatcaatatcTCCTATACAACATATTTGTGATATTTGTGATAAATCATTTACCACAAAAGCTTCATTAAATCGTCATCGTAGAATACATACTGGACCAGCACGTCCATATAAATGTAGTTATTGTCCACATGCATCTGCATCAAACAgtaatttaaaacaacatGAAAGAATACATATTggagtaaaaaaacaaaaatgtgattattgtggtaaaaaatttcattggaaCTTTGAAAAAAGTATGCATGAACGTAGAGTACATACCAAAGAACGCCCATATCAATGTGAAATTTGTGGTGAgaaattttttaccatttcattattaaaaaatcataataaaaggCATACAAatacaagaaattttatttgtagcaTATGtgataaaagattttatgaaCGTCAACTATTAAAAGATCATATGATTGGTCATAGTACTGAGAAACCACATAAATGTGATATTTGTAATGCAAAATTTGGTAGACGAAAAGCATTAATACAACATGTAAAGATTCACGATgatattaaagaatataattgTACATTGTGTAATAAATCATTTGCTCAAAGACCAGGATTATATAGTCACATGAAATATCataaaatctcaAGCAATAATGTAAGGAGTCCAGAAAAAGAGCCAACACAGAAAGCAGAACTAAATAATccaaaattaaatgAACTTGATAATTCACCTATTCTCATATTAGAAGAAATACCACAACCGAAAATAAGTTTAACAACAGTTCAAAAATCGCCAAAGTATAATTGTAAAAGATGTAAATTAACATTTCTACATCGAAGTAATTGGCTAATACATAGGTATGAAAACCATAgtcgtaaaaataaaaatatatcaaaatctCCTATACAACATATTTGTGATATTTGTGCTAAATCATTTACCACAAAAGCTTCACTAAATCGCCACCGTAGCGCACATAATGGACCAGAACGTCCATACAAATGTCCTTATTGTCCACATGCATCTACATCAAAGAGTAATTTAAGACAACATAAAAGAATACataatagtataaaaaaacaaaaatgtaatttttgtggtaaaaaatttcatgGGAATTTTGAAAAGAGTGTTCATGAACGTATGGTACATACTAAAGAACGTCCATATCAATGTGAAATTTGtggtgaaaaattttatacaatttcattattaaacaATCACAATAAAAGGCATACAAATACAAAGGATGTTGTTTGTAATATATGtgataaaagattttatgatCGACAACTATTAAACGATCATATGATTGGTCATAGTAATGAGAAACCACATAAATGTGATATTTGTAATGCAAAATTTGGTAGACGAAAAGCATTAATACAACATGTAAAAATTCACGGTgatattaaagaatataattgTACATTGTGTAATAAATCATTTGCTCAAAGACCAGGATTATATAGTCACATGAAATATcatgcaaaataa
Protein Sequence
MNGIDIESIVPLKSSTKCGELYFENSIALDESPILILEEIPQPKIILTTVQKSLKYNCKSCKLSFLHRNNWLIHRYKKHSRKNKNISISPIQHICDICDKSFTTKASLNRHRRIHTGPARPYKCSYCPHASASNSNLKQHERIHIGVKKQKCDYCGKKFHWNFEKSMHERRVHTKERPYQCEICGEKFFTISLLKNHNKRHTNTRNFICSICDKRFYERQLLKDHMIGHSTEKPHKCDICNAKFGRRKALIQHVKIHDDIKEYNCTLCNKSFAQRPGLYSHMKYHKISSNNVRSPEKEPTQKAELNNPKLNELDNSPILILEEIPQPKISLTTVQKSPKYNCKRCKLTFLHRSNWLIHRYENHSRKNKNISKSPIQHICDICAKSFTTKASLNRHRSAHNGPERPYKCPYCPHASTSKSNLRQHKRIHNSIKKQKCNFCGKKFHGNFEKSVHERMVHTKERPYQCEICGEKFYTISLLNNHNKRHTNTKDVVCNICDKRFYDRQLLNDHMIGHSNEKPHKCDICNAKFGRRKALIQHVKIHGDIKEYNCTLCNKSFAQRPGLYSHMKYHAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-