Eliv003634.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Empis livida
Gene Symbol
-
Assembly
GCA_963932195.1
Location
OZ010645.1:50037530-50040552[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0014 0.082 13.6 4.0 1 23 174 196 174 196 0.97
2 15 3e-05 0.0018 18.8 6.8 1 23 204 226 204 226 0.98
3 15 0.53 32 5.4 2.7 1 23 291 313 291 313 0.96
4 15 0.0001 0.0062 17.1 1.4 1 23 318 340 318 340 0.96
5 15 0.0072 0.43 11.3 2.7 1 23 346 368 346 368 0.98
6 15 0.0011 0.065 13.9 0.3 2 23 394 415 393 415 0.97
7 15 0.0016 0.096 13.3 1.8 1 23 496 519 496 519 0.97
8 15 0.37 22 5.9 0.8 1 23 556 578 556 579 0.95
9 15 1.9e-07 1.2e-05 25.7 2.5 2 23 599 620 598 620 0.97
10 15 7e-08 4.2e-06 27.1 2.9 1 23 627 649 627 649 0.98
11 15 7.3e-06 0.00044 20.7 1.5 2 23 664 685 663 685 0.95
12 15 2.3e-07 1.4e-05 25.4 2.0 1 23 691 713 691 713 0.99
13 15 1.2e-06 7.3e-05 23.2 2.9 3 23 721 741 719 741 0.96
14 15 2.6e-07 1.6e-05 25.2 1.3 1 23 747 769 747 769 0.99
15 15 0.00042 0.025 15.2 0.1 1 23 775 799 775 799 0.91

Sequence Information

Coding Sequence
atgtcaaaattagaaaatttaaatgtggaAATAACATGTCGTTCATGTCTGATAGAATCAGATCAATTAACATCACTTTTTGCCGTTGCagataataatgaattatctTTTGGAGATATTCTAGCTAATATtgcaaatacaaaatttaatctttacaataaaattgatttgcCAACAAAAATATGCGATTTATGCCAACAAGATTTATTGCTAGcttataactttaaaataaaaactgaaaaaagtgaaaatattctacatgaatatttaaaaaataaaaattcaattattgaaCAGATAACAGTGCCAGTAGAAACTGATTatggttttataaatataaaatctgaaaaaaattttgataatgaaTTAACAATTGAAAAGAGCGAAGAAGAAGAATATGCTAGTGGTGAATATGCCGgttatgaaaataatagtttgaaaaatttttacattaacgAGAATGACgaagatgatgatgaaaaaGATAAACAACCAGTATCACGGCTGGGACAAGGAAAATTTCATTGTAGTTTGtgtaaatctaaattttcatcacaaggtcaattaaataatcacACGAAAATTCACGAAAATGGCAgtgctaataaattttattgcatgAACTGTGATAAATGTTTTGCAACAAATCGGAATTTACATAGGCAtatgaaattacatttaaaagaaCAATTAACAAgtcaaatgaaaattgaaaaggtTTTTACATCACAAGCTGATCCAATGGAAACCGATGTACAATATGATGTTTGTACTGATCCCGATCGAGAAGAAGAAAACAAAGATGacattaaattagatttaaaaatttttaaaccagAAACAAAATTGAAGCCAAGTATTGATAGAAATTTTCCGTGCCAATTTTGCTCGTCTAGATTTTCTAATCAAATTCAATTAGATTGTCATATGAAAGCACATTCTGCTAAAAAATTCTTCTGTGAAGCTTGTGATCGATattttgttaataatcGTAATTTGCAAagacatttaaaattacattatggTCCAAGTGAATTTAAATGCTCGCAATGTAGTAAAACATTTGAATCAAAATTACGTTGGAAGCTCCATGAACGTAGTCATTTCGTTAAAGAAACTGATATATCAGGGTACGACTTTGATAAAAACAGTTGTATGCCAAATGAGACAAAAACCTTAGAATGCAAAATTTGCAATATACCGTTtacgaaaatttttcttttgcgAGAACATTTACAGAGTCATATAAAACCAGAAACaattgatattgaaaatataagaaaaagcAATTATCTAACAAATCTTGTACCAGACGGCGCAACAAATTTGTGCAAAGTAATTGATTATATTGTTGCTGAACTTGAAGCAGGTCGAACTGAGAAATTTTATTCAGCTACAAATATGGTTGGCAATGAATTGAGATTAAGTGATTCTGAAACCGATACAGATTCTGAGGATAGTAAGAAATTGCTTCaagttaatttatatgtttgcCAATTATGTGAGCAAACTTTTACACGACggtataaaattctatatcaTCAACGAAATGATCATACAACTGAGGAATTGGAAAATGAATGTGGTACTtgtgaaatgaaatatttatcgaagaatttattagattatcACATTAAAACGCAATGTGGTAATGCTGAAAAACATTTTACCTGTGATGTttgtaaagtaaaatatatgtggaaagaaaatattgaacaaCATATTCAAATACATCATACAAAATCTAAAcatccaataaaattaatacgaAAGTATACATCGGctaaaaaattagaatgtGATATTTGTCAGAAAAAATTTTCACGTCCTGAACATTTAAGTCGACATCAGCGAACTCATAATCCAGCTGAGAAAAAGTTTGAATGTGAAAAATGTCAAAAGAAATTTAGTCGCAAAGATAATTTGAAATCACATATGAAAGTTCACGATGAAAATCATAATGATCCATCGGAAGAaagtaaatcatttttatgtgTGTTTTGCGGTAGAAAGTTTCGTAATTCGTCAAATTTGGTGGTACATACACGACGCCATACTGGagaaaaaccatttaaatgtGATTTTTGTGATAAAGGTTTCCCAAGATCATCAGATCTCAGAACACATCGAAGGACACATACCGGGGAAAAGCCCCATCTGTGTACGTTATGCGGCAAAGGCTTTTCAAGATCAAATAAgCTGACAAGACATATGCGTATTCATAGTGGAATAAGACCTTATAAATGTACGTACTGTGATCGGGCATTCACACAATCTAATGATCTAACAATTCACGTTAGAAGGCATACCGGAGAGAAACCTTATGTCTGTGGTATATGCGGGGAACGTTTCATACAGGGAACTGCTTTACAAAATCATAGAAAAAGTCGTGGTCATTTTGAAGAAGGAAATGTTAACGTACCATTTTCTTATATTAGTCAAAATAATCCAAATCCATTGAATAATAGTGGACGTGTTGATCGTATTGGCATGCCTAAAAATAATGCTACTGGCAATAATAGTGTTATTGAACCAAAACCACTACAAAGATCTATTACAATATCCACACCAAGTGCAACAAGTACATCCGGTACATATATTGTAGGACAAGAAGAAATGGTtggattaaattataaacatatagCAAGTTTCGTAAATGTTCAATCGGTTTTGCATCCAGGAGGAGCTAGTGTATATGAAATACAATCTAGTTCTTATAATCATgattccaattaa
Protein Sequence
MSKLENLNVEITCRSCLIESDQLTSLFAVADNNELSFGDILANIANTKFNLYNKIDLPTKICDLCQQDLLLAYNFKIKTEKSENILHEYLKNKNSIIEQITVPVETDYGFINIKSEKNFDNELTIEKSEEEEYASGEYAGYENNSLKNFYINENDEDDDEKDKQPVSRLGQGKFHCSLCKSKFSSQGQLNNHTKIHENGSANKFYCMNCDKCFATNRNLHRHMKLHLKEQLTSQMKIEKVFTSQADPMETDVQYDVCTDPDREEENKDDIKLDLKIFKPETKLKPSIDRNFPCQFCSSRFSNQIQLDCHMKAHSAKKFFCEACDRYFVNNRNLQRHLKLHYGPSEFKCSQCSKTFESKLRWKLHERSHFVKETDISGYDFDKNSCMPNETKTLECKICNIPFTKIFLLREHLQSHIKPETIDIENIRKSNYLTNLVPDGATNLCKVIDYIVAELEAGRTEKFYSATNMVGNELRLSDSETDTDSEDSKKLLQVNLYVCQLCEQTFTRRYKILYHQRNDHTTEELENECGTCEMKYLSKNLLDYHIKTQCGNAEKHFTCDVCKVKYMWKENIEQHIQIHHTKSKHPIKLIRKYTSAKKLECDICQKKFSRPEHLSRHQRTHNPAEKKFECEKCQKKFSRKDNLKSHMKVHDENHNDPSEESKSFLCVFCGRKFRNSSNLVVHTRRHTGEKPFKCDFCDKGFPRSSDLRTHRRTHTGEKPHLCTLCGKGFSRSNKLTRHMRIHSGIRPYKCTYCDRAFTQSNDLTIHVRRHTGEKPYVCGICGERFIQGTALQNHRKSRGHFEEGNVNVPFSYISQNNPNPLNNSGRVDRIGMPKNNATGNNSVIEPKPLQRSITISTPSATSTSGTYIVGQEEMVGLNYKHIASFVNVQSVLHPGGASVYEIQSSSYNHDSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00644376;
90% Identity
-
80% Identity
-