Eliv015613.1
Basic Information
- Insect
- Empis livida
- Gene Symbol
- -
- Assembly
- GCA_963932195.1
- Location
- OZ010649.1:9067112-9071988[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4e-05 0.0024 18.4 2.9 1 23 400 422 400 422 0.98 2 14 4.7e-05 0.0028 18.2 0.3 1 23 428 450 428 450 0.97 3 14 7.3e-05 0.0044 17.6 1.7 1 23 456 478 456 478 0.98 4 14 2.2e-05 0.0013 19.2 3.1 1 23 484 506 484 506 0.97 5 14 0.00025 0.015 15.9 4.9 1 23 512 534 512 534 0.98 6 14 8.9e-05 0.0054 17.3 5.7 1 23 540 562 540 562 0.97 7 14 4.2e-07 2.5e-05 24.6 4.3 1 23 568 590 568 590 0.98 8 14 2.1e-06 0.00013 22.4 3.2 1 23 596 618 596 618 0.97 9 14 9.2e-05 0.0055 17.2 6.7 1 23 624 646 624 646 0.97 10 14 8.4e-05 0.0051 17.4 6.4 1 23 652 674 652 674 0.98 11 14 4.4e-06 0.00027 21.4 4.5 1 23 680 702 680 702 0.98 12 14 0.00019 0.011 16.3 0.4 1 23 708 730 708 730 0.97 13 14 0.00077 0.047 14.3 4.3 1 23 740 762 740 762 0.99 14 14 1.8e-06 0.00011 22.6 1.4 1 23 768 791 768 791 0.97
Sequence Information
- Coding Sequence
- atgaatactGATCACTCAGGTGAACAGCATTCTGAACATTTGAATGCTGATCATTCAAGTGATTCGCAAAGGCAGCAACAAACATCACCACAACAACATCCTCCTAATCATCAGCAGCAAATTGAGcatCAGCATCAACATGATAATAGAGTTCTTGGTGGTGTTATTCATCCAGTTAGCGAAGCTGAAGTTAAACAAACATTACCAATTGCCAATGCACCACAAttGGGCAAGTATTGGGTCGTTACGAATTTATTTCAAGGTCATGGGCAAAGTACATACAATTTGACATCACCACCAACGACATCATCAGTTCCTACGTTACCACCTCCAATATCTTCTACACATACATCAACCGCAACTTCTTTGCCTAAACCGGATACTATCAAACAAGAAGATATGCAACAACGTCATTCAAATTCTACTGCACAACTTGTAACATCAGTTAGTACAAGTTCCATACAAATCCCAAATCCAATGATAAATACATCAAATAGTCAACATCAAATATCTAATGGAACTATGATTACATCTCAACCAGAACAAATTCAGGTTCAATTAAATTCTGGCAATACTATGATGGTAATGGATACATCTCATTCTGCAGGCGGAAAACATGATAAAATGAATTCTATGAATgctcaaaatattaataatgatcAAATGACAATTACAAGAAATATGATACCGAATACActtcaacaaataataaaacaagaaaaaccaTTTGTTAATGGTAAACCAGTAACAACACATTTACAAATTCAACAACAATTGCCAACAGATAGTAAAATGCATGTATCACATTTGTTAGATGTAAGGAATCCAGATGGTTCaccaattaaaattcaacCGTCTGACCAAGAATTAGGAAAATCTTTAGGTGTTGAAATGTATAAAGTTAATATTGAAGATTTAAGTCAGTTTTTATCGTATCATGAAGTTTTTGGTAAACTTCATGGTGATGTTATAACACATCCAGTTTCACATACAACAACCCAACAAACAACTGTAGGTAATAATGCAATTACAATAACAACTAATGCTAATAGTGGTGTTGGAGCAACCAATATTACAAATTCTTCTGGTGATTTGATAATGcctaaaatggaaaatataaatcaaataactGGTATAACCAATACAGCAGTAAATCCTCATTTAATTGGCGATGCAGCAACGATACCACCAGCTAATCATACCTGTGATATATGTGgaaaaatgtttcaatttaGATATCAGTTAATTGTTCACCGACGTTATCATACCGAACGTAAACCATTTAATTGTCAAGTATGTGGCCAAGGTTTTACAACATCTCAAGATTTAACCAGTCATGGAAAAATTCATATTGGCGGACCAATGTTTACGTGCACAGTATGCTTTCATGTTTTTGCCAACGATGCCAGTCTTGAAAGACATATGAAAAGGCATTCAACTGATAAGCCATTTGCATGCACAATATGTCAGAAAACATTTGCTCGAAAAGAACATTTGGATAATCATTTTCGAAGTCATACTGGTGAAACACCATTCCGTTGTCAGTTTTGCGCAAAAACTTTCACACGTAAGGAACATATGGTTAATCATGTTCGAAAACATACCGGTGAAACACCACATAGATGCGATATTTGTAAGAAATCGTTTACTAGAAAGGAACATTATGTTAATCACTACATGTGGCATACTGgtGAAACTCCTCATCAATGTGAAGTTTGTGGTAAGAAATACACTCGAAAGGAACATTTGGCTAACCACATGAGATCACATACAAATGATACACCTTTTCGGTGTGAAATTTGTTCAAAGAGTTTCAGCCGAAAAGAACATTTTACTAACCATATTTTATGGCATACTGgaGAAACGCCACATAGGTGTGATTTCTGCTCAAAAACATTTACAAGAAAAGAACATCTTTTAAATCATGTTCGTCAACATACAGGAGAATCTCCACATCGATGCACATATTGTCTTAAAACATTTACTCGAAAAGAACATTTAGTAAATCATGTACGTCAACATACCGGTGAGACACCATTTAAATGCACTTATTGCACTAAAGCATTTACTAGAAAGGATCATATGGTCAATCATATAAGACAGCATACTGGAGATCGTCCTTATGCATGTGAGACATGTGGTAAATCTTTTCCACTTAagggaaatttattatttcatcaGAGAAGTCATACTAAAGGTCAACCACAAGAGCGGCCctttaaatgtgaaaaatgtcctaaggattttatttgtaaaggtCATTTGGTTTCACATATGAGATCACATTCTGGCGAAAAGCCACACAGCTGTCCTTTGTGTAGCAAAGCTTTTGttgaaaaaggaaatttaaagcGTCATATGAAAATGAATCATCCTAACGCAGTATTACCAACACCTGGTTTAATTACGaatataaaaactgaaataaatccaattacaataaattccAAACCAGTTGTTACATCAgcacaatatttaaatgaaagaaTTCCATTAATAACTAAAGCAAATATTTTgccaataaataatttagtacaACACCAACCACCAACAATGCATACTATACAACAGATTACATCATCTGTAGGTACCAGTGCTGGTGGTGGTAATACTAATCAAACATTGTCTGGAGGGCTGGTACCACTAGTTACATCAACTATTACATCTCATGCTAGTCAACAACatcagcagcagcagcaacaacaacaacaacagcagcaacaacaacagcaacaacaacaacaacaacagcagcagcagcagcaacaacaacagcagcaacaacaacaacaacaacagcagcagcaacaacaacagcagcagcagcaacaacagcagcagcaacaacaacaccaGCATCAACAACAGCCACATATGACATCTCAGATGCATCAATCGCCTGTAAACACAGGAAATCCAAGTGATGGAACACAGCAACAGCCGCAACCTGTACCAATTGCTATTATTCAATCTACTGATCTATCTACTATAGGTCGGACTACTATACAAATACAACATTTACAAACCAATGTGGAACAGCATCCAGTTGtgtattaa
- Protein Sequence
- MNTDHSGEQHSEHLNADHSSDSQRQQQTSPQQHPPNHQQQIEHQHQHDNRVLGGVIHPVSEAEVKQTLPIANAPQLGKYWVVTNLFQGHGQSTYNLTSPPTTSSVPTLPPPISSTHTSTATSLPKPDTIKQEDMQQRHSNSTAQLVTSVSTSSIQIPNPMINTSNSQHQISNGTMITSQPEQIQVQLNSGNTMMVMDTSHSAGGKHDKMNSMNAQNINNDQMTITRNMIPNTLQQIIKQEKPFVNGKPVTTHLQIQQQLPTDSKMHVSHLLDVRNPDGSPIKIQPSDQELGKSLGVEMYKVNIEDLSQFLSYHEVFGKLHGDVITHPVSHTTTQQTTVGNNAITITTNANSGVGATNITNSSGDLIMPKMENINQITGITNTAVNPHLIGDAATIPPANHTCDICGKMFQFRYQLIVHRRYHTERKPFNCQVCGQGFTTSQDLTSHGKIHIGGPMFTCTVCFHVFANDASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGETPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICSKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHVRQHTGETPFKCTYCTKAFTRKDHMVNHIRQHTGDRPYACETCGKSFPLKGNLLFHQRSHTKGQPQERPFKCEKCPKDFICKGHLVSHMRSHSGEKPHSCPLCSKAFVEKGNLKRHMKMNHPNAVLPTPGLITNIKTEINPITINSKPVVTSAQYLNERIPLITKANILPINNLVQHQPPTMHTIQQITSSVGTSAGGGNTNQTLSGGLVPLVTSTITSHASQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQHQQQPHMTSQMHQSPVNTGNPSDGTQQQPQPVPIAIIQSTDLSTIGRTTIQIQHLQTNVEQHPVVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -