Eliv007517.1
Basic Information
- Insect
- Empis livida
- Gene Symbol
- bab1
- Assembly
- GCA_963932195.1
- Location
- OZ010646.1:52931685-52934004[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-13 3.9e-10 39.4 0.0 3 45 431 473 429 473 0.92 2 2 0.25 4.3e+02 0.9 0.8 4 20 576 591 575 591 0.91
Sequence Information
- Coding Sequence
- atggGTAGCAGTGAAGGACAAACATATTGTTTAAGATGGAACAATCACAAATCaaatttagttgaaatattagatgcattaattaaaatggaatCATATGTTGATTGTAcaattgttgttgatgatcAAGTACAATTTAAAGCACATCGTGTTGTATTAGCAGCTAATTCACCATATTTTCAATCAATATTACAAGATGTACCAATGGATCATTGTAGTATATTATTTCCAGGTGTACAAGCATTTGAAATGCGTGCATTACTTGAATATATGTATACTGGTGAGGTAAATGTAACACAAAgtcaaataccaaaaattatgaaaattgctGAACAATTAGAAGTTAAAGGTTTATTTGATATGACTGatttaaaagcaaaatttaataaatttgatgaacaaacaacaccaacaacaacatcatcatcatcgtcaacatcatcaacatcaacaacaacaaaccatcatcagcatcatcatcattatccaTCATCACAACAATTACCTTCAACACATActacaacaacatcaacatcatcaaTATTTTCTGGTAATAGTGCAGAACAAAGTGGTAGTACAAGAAATGATGATAATCGTCAAATTCATTCAAATATTGTTGGTAGTGATTCACAGCAACATAATCAACAGTCTGCTGAATTAtcacatcatcatcatcatcatcatcatcaacaacagtCATCACCAGTAATTACAACATCAACAAATATAACAACAGCACAGAGTAGTAGTGCTTCACCGCCATACACATATAAATCACCTTATTCTAGTCTGTATACAAAAAGTCCAGGACCATCAACATCAGATCGTCAACATTGGCCATCAATATCACCAGTTATGTCAAATGTATCAATACCAACAACAGCAGCTGCAGCAGCTATGTTAAGTTCAGTGTATGAAAGTGCAGCCGATATGAATCCattaaaaagaaagaaattatcATCGATCTCAAGTATGCTAATGTCAAGAGATACACCAATATTAAGAAATGTTTTAGCCCAAACACATGCAGCAGATTCATCACAACCAATGCCTTTAGTATGTCAATCAATAAAACAAGAAAGATCAGAAAAAACTACACCGGCTGCATCAGATTACAGTAGTAATGAAAGAAAGTATAAACATGATGAACCACATTCACCATATACAGATAAATCATTTGAAGATGATGGTCTTGAGTgcgaaccaaaatatttaggtGATTCACGATCATTTTCACAACAATCAAATTCACAAAAACCAGAATGGAAAAGATATAAACAGTATACACGTAGTGACATATTAGCTGCCATTGAATGTGTACGCAATGGTATGAGTGCTTTACAAGCATCTCGTAAATTTGGTGTACCATCACGAACACTTTAtgataaagttaaaaaattaggtATTACAACGGGCCGTCCAATGAACCGTACAATAAAACGTAGTCCAAGTAGTGGTAGTAGTCCAGCTAGTTTTCCATTTGGTTTAAGTGGAACAAGTAATCCATATGGACAATCAGATGCTATATTATCACAAATGCATGAATCAAATGAACATCATCaccaccatcatcatcatcatcgagAAAAAGAACGTGGTGAACATCATATACCATCAAATATACCACATCCAGCAGCAGCAGCTCTATTAGATCCAACATTTTTACAACAGGCATTTGAATCACGTGGTGGTGATATAGCTGGTCGAGAAGCATTACATGCTATGGCATTAGCGGCTGCAGCTCATGCAGCTGTTAATGGTATATCAACTAGTCCAGGTACTAATGGTACTGCCCGTTCACCAAGTCCAGGATTTGCCATGAAATATTCAAGATCTCAAAGTACACCACCACCGCCATCTCAGCTAACACGGGAGAGAGAGAGAGACTTTATGGAAAGAGAACTTGAACGTGAAAGAGAACATGATATGGACGAAGAATTCGATCGAGACCAACGTGAACGAGAACTTGAAAGGGATCGTGAATTAGATAATGAAACTGAAGAAGATGAAAATCATGTTGAAGATTTATCAGTATCTAGAAAAGATACACAATCATCACCAAAAGAACAAATATCTCCCAGACCACCATCTAATCATCATTCCTATGGACCAACATCAATACAACAATCATCTGGTAGTGTTATTGTTCCACCAATGACTAAATTATCACCAAATGGTGGTGAAGATTTTAAACCTAATATAGAACTTAAAAGAGAAATAATAACCGATGATACtagagaaaataattaa
- Protein Sequence
- MGSSEGQTYCLRWNNHKSNLVEILDALIKMESYVDCTIVVDDQVQFKAHRVVLAANSPYFQSILQDVPMDHCSILFPGVQAFEMRALLEYMYTGEVNVTQSQIPKIMKIAEQLEVKGLFDMTDLKAKFNKFDEQTTPTTTSSSSSTSSTSTTTNHHQHHHHYPSSQQLPSTHTTTTSTSSIFSGNSAEQSGSTRNDDNRQIHSNIVGSDSQQHNQQSAELSHHHHHHHHQQQSSPVITTSTNITTAQSSSASPPYTYKSPYSSLYTKSPGPSTSDRQHWPSISPVMSNVSIPTTAAAAAMLSSVYESAADMNPLKRKKLSSISSMLMSRDTPILRNVLAQTHAADSSQPMPLVCQSIKQERSEKTTPAASDYSSNERKYKHDEPHSPYTDKSFEDDGLECEPKYLGDSRSFSQQSNSQKPEWKRYKQYTRSDILAAIECVRNGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRTIKRSPSSGSSPASFPFGLSGTSNPYGQSDAILSQMHESNEHHHHHHHHHREKERGEHHIPSNIPHPAAAALLDPTFLQQAFESRGGDIAGREALHAMALAAAAHAAVNGISTSPGTNGTARSPSPGFAMKYSRSQSTPPPPSQLTRERERDFMERELEREREHDMDEEFDRDQRERELERDRELDNETEEDENHVEDLSVSRKDTQSSPKEQISPRPPSNHHSYGPTSIQQSSGSVIVPPMTKLSPNGGEDFKPNIELKREIITDDTRENN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01297621;
- 90% Identity
- iTF_00643325;
- 80% Identity
- iTF_00643325;