Ehyp008739.1
Basic Information
- Insect
- Elymnias hypermnestra
- Gene Symbol
- -
- Assembly
- GCA_015832385.1
- Location
- JACTOM010000103.1:289911-298340[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.23 19 6.6 3.5 1 23 53 76 53 76 0.96 2 12 0.01 0.84 10.9 1.3 2 23 111 132 111 133 0.93 3 12 0.00072 0.058 14.5 1.9 1 23 139 161 139 161 0.98 4 12 0.099 8 7.8 0.7 1 12 167 177 167 183 0.83 5 12 0.17 14 7.1 2.2 3 23 342 363 341 363 0.93 6 12 0.0002 0.016 16.3 3.5 1 23 369 391 369 391 0.98 7 12 1.3e-05 0.0011 20.0 2.7 1 23 397 419 397 419 0.98 8 12 0.0039 0.32 12.2 2.3 1 23 445 468 445 468 0.95 9 12 0.0038 0.31 12.2 4.1 3 23 504 525 503 525 0.94 10 12 0.0083 0.67 11.2 5.7 1 23 531 553 531 553 0.97 11 12 0.00092 0.074 14.2 4.2 1 23 559 581 559 581 0.97 12 12 0.007 0.57 11.4 3.0 1 23 587 609 587 610 0.95
Sequence Information
- Coding Sequence
- ATGACTGTGTTAAGAGATAACCCAAACAATCCCTTGAAGGTAGACCTATCGAATCGTGGTTTTCCTATTGAGGAAAATTCTTCTTTCTCAGTGCCTATAGGAGAAGATTACTCAACGAACTTCACGCTGACCTTAGACGCGGACGGATCAAGAACCTACGTGTGCAATTCGTGTCAGAATGTATACAAGAAGCGTAATTTGTTCTGGCAACACTACAAACATGTCCATCTGAAACAACGCCCTAAGTTGAGGAGTTGCCATTTATGTAACGTCAAAGTCCCTGGATATATGAGAGCTTTTCACATGGAAGAGCATGGGTTGCCAGCCCCAACTTGTGGCGCCTGCGGGAAGAAGTTCGCATACCCTTTTCAAGTGTTGCAACACCAGAAATTCCATCACATGGGCGAATCTGACTACCGATGTGAAAGTTGCAATCTAAAGTTCAAACTTCGCAGCGAATGGAATAAGCATCAGATAAAACATAAGACGGAGAAGACATACAAATGCGAATTGTGCGAGAAAACTTTCAAGTGGAAAAACTGGAAAAATCCATCATGGATACCGGGAGGCCGCGGGGGCGTCACTGGCACTGTCACAAAGGGCTACGCGACAGGTTACCTCaaaagtaaaactgagcacgccgccagTGACTCCCGTGAGGGGGCCCTTACCATGATCCTAAGGAACGAGCTAACTATGGCACAGCGcggaggcgcgccgcccgacaagtTACGGTGCCTCACTCAGCGATATGACGGCCCCCGCTGTCCTAAGGAAGAAGACGGCGGTCATGAGCCCGggcgcctacgacggagggcgtgggcggcggaaTCCGCCCAGGAACCCATGTCAACACTCCTCCCGCctcaccatcgctctcacgatgGTGGGCAGGGAGAGCATTACAAGCAAGTGCACCTAAAACTTCGCCCTAAACTACGCAGTTGTCATCTATGTAACGTGAAAGTACCAGCGAGGAGACGCGCTTTTCACATGGAGGAACATGGAAGACCAGCACCGTTTTGTGGAGCTTGTGGGAAGAAGTTTGCCTTCCCCTCGGAAGTTTTATACCACCACAAACATTATCACATGGGGGAGAAGAAGTACAGCTGTGATACATGCAACTTGGCGTTCAAATCCCGCAACCATTTGAACAATCACAAGATAAAACACACGCCAGAAAGGCCTTTCAAATGCGAGATGTGTAACAAAACGTTCAAATGGAAGAACACTTTGCGGAAGCATATGATGATACATTTGAATATAAGGCCTCACGTGTgtaaatACGCGAAGGCACGCACAATCCGCAAAATGGCCGACGGCACTACAGATTACATATGCAACGTTTGCAACAGCGTCTTTAAAAAGCACAACAACTTCGCACAACACTATAAAGAAGTGCACTTAAAAAAACGTCCTAAACTAAGATCTTGCCATTTATGCGACGTTAAAGTACCAGGTCATAGGCGAGCTTTTCATATGGAGGAGCACGGTCTACCCGCGCCTTGTTGCGAGTCCTGCGGCAAAAAATTCGCCTACCCCCATCAAGTTTTACGCCACCAAAGATTCTATCACATGGGTGAGAAGGACTTCGCATGTAAACTATGCGATTTTAAATGCTCCACCCCTCATTATCTGAGATACCACGAGAGAAGTCACTCGTCTAACAAACCATTCCAATGTGATTACTGCAAGAAATGCTTTAGATGGAAGAAAAATGTTACCACACATATAATGGGCCATTTAGGGATAAAGAAGCATGAGTGTGTCTTCTGTTCTGCTGCTTTTGTACAGCAGAACAGCTTgaaataccatatatccaaacATCATCCTGGTTGCcattaa
- Protein Sequence
- MTVLRDNPNNPLKVDLSNRGFPIEENSSFSVPIGEDYSTNFTLTLDADGSRTYVCNSCQNVYKKRNLFWQHYKHVHLKQRPKLRSCHLCNVKVPGYMRAFHMEEHGLPAPTCGACGKKFAYPFQVLQHQKFHHMGESDYRCESCNLKFKLRSEWNKHQIKHKTEKTYKCELCEKTFKWKNWKNPSWIPGGRGGVTGTVTKGYATGYLKSKTEHAASDSREGALTMILRNELTMAQRGGAPPDKLRCLTQRYDGPRCPKEEDGGHEPGRLRRRAWAAESAQEPMSTLLPPHHRSHDGGQGEHYKQVHLKLRPKLRSCHLCNVKVPARRRAFHMEEHGRPAPFCGACGKKFAFPSEVLYHHKHYHMGEKKYSCDTCNLAFKSRNHLNNHKIKHTPERPFKCEMCNKTFKWKNTLRKHMMIHLNIRPHVCKYAKARTIRKMADGTTDYICNVCNSVFKKHNNFAQHYKEVHLKKRPKLRSCHLCDVKVPGHRRAFHMEEHGLPAPCCESCGKKFAYPHQVLRHQRFYHMGEKDFACKLCDFKCSTPHYLRYHERSHSSNKPFQCDYCKKCFRWKKNVTTHIMGHLGIKKHECVFCSAAFVQQNSLKYHISKHHPGCH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -