Ehyp011659.1
Basic Information
- Insect
- Elymnias hypermnestra
- Gene Symbol
- -
- Assembly
- GCA_015832385.1
- Location
- JACTOM010000222.1:1326625-1330735[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.076 6.2 8.2 4.1 1 23 288 311 288 311 0.96 2 12 0.07 5.7 8.3 3.3 1 23 325 347 325 347 0.93 3 12 0.00019 0.015 16.4 0.9 2 23 353 374 352 374 0.96 4 12 0.0032 0.26 12.5 3.7 3 23 380 401 379 402 0.94 5 12 0.00069 0.056 14.6 0.2 1 23 404 426 404 426 0.98 6 12 3.6e-05 0.0029 18.6 2.3 2 23 500 521 499 521 0.96 7 12 0.045 3.7 8.9 0.4 2 23 541 563 540 563 0.96 8 12 2.2e-06 0.00017 22.5 3.2 1 23 569 591 569 591 0.98 9 12 0.00014 0.011 16.8 1.7 2 23 597 618 596 618 0.96 10 12 0.32 26 6.2 4.9 2 21 625 644 624 647 0.93 11 12 9.8 7.9e+02 1.5 0.2 2 19 655 672 654 673 0.83 12 12 0.011 0.9 10.8 2.6 3 23 686 707 685 707 0.93
Sequence Information
- Coding Sequence
- ATGTATATGCAAGAGGTCATCATCTCATCTCCAGTTTCTCACCCGGTACTTCTATTACCAAAACGATGTACAACGCTACTAACGAATTGCGGACCGGACGATACTTTATTTATCAATCTGAATATATCGTCTGACGATACCGACGGCAACAAAACTATCATTTATTCTGGTTTCTGTAACGTCAAAGTATTAGAAGATGAGACAAATGACGATCGTTATACTTTCGATTGTGATAATATCTCCAGGCAAGTTATAGGATCAGATTTTCCCGGTGAAAATTATGCCGACGTGCAATCCCAGGTGTGGATAGATCCGGCCAGGAGTCCTTACGTATACAATAACTATGATGTGATAGAACCCGAGAGATGTTATCCCCAAGAATCCAATTTTATAACAGTCGAACAACACAATACATATGTAACACAGAATATTTACAATCCCAATGATGTATTGCAATACTCGCCGGTTACTGAATTCGAAAATAAAAGCAATAGTAGTGGCAGTGGTAATGAAACAACTATTGATGAGTCAAATCAAGACTCTAGTATGTCTGAAGAGTTTGACTGTGGGGTATTCCTATCTCAGTTGCCGGAGGAGATAATGTTGGAGAATGAAAACAGGGCAAGGGAAGAGTTGAAATATATCGGCTTGCAAAGTGAAAACAATGCTTTGAAGCAGCTCATGTCACCTGATATTCAGGCAATGTCGAAGCAGCAGAAGACTATATTGTATGTAGGCCATGGTACAGAGTACAATGAAAATGCATATAATATAACAGGCAGCAGTCCCCAGATTAAGTCCATTACACGTGGAAGAGACAATGAAGTTATGCaaatcagcgagcatttgAACCGCGAGGAATACAAATGCGACGATTGCGAAGAGATATTTGATTGTAtgtcagatttaaaaaaacacacgCAACACACCCATAAAAGCGTGAGCACCCCGCACGAAGCTCCCATGTTTAACTTCACGTGTCGGAAGTGCGGTAAAGTGCTGAAGAGCGAGGAGAAGTACGAGACCCACTGCCGAGGCCACGGGGACCCGGAGGTCGAGTGCGACGTGTGCTTCAAGGTGTTCGCATCCAAGTTCACCCTGCGCAACCACAAGAAGTTACACCAGAAACAGAACAACTGCTCGTTCTGCAAGAAGAGCTTCGGCAGCAAGAGGGAGCTGAAGGTGCACACGGCCAAGAGCCACCACCTGTACAAGTGCGACTCGTGTGACTACGCGGTGGCGGACCGGCCGCAACTGAAGAAGCACAGGGCCTCGCACAAACCGAAGGGCACCTCGTACCTGGTGGGGGACAACTTCGTCGAGCCCGCGACGAGCAAGGCCAATCGCGGGACGGTCGTGGACTACACCTTCGAACACGAGGAGACCTCGACCAAAGTGGACGACCTGGAGGAACCGGACGCGGTGCTTGCCAGAGTGATGTCCAACAAAATATTCCTTCTGCATTCGAAGAACGCGGGGCGCTACAGTAACAAGAAGAAGTGTGACGTGTGTCACAAGAGGTTCGACCGCATCAGCGACCTGAAGCGGCACCTCATCGAGCACGTGATCCGCAGCACCTTGGCCAAGACCCCCGTCGGCAGCAACGGGGTCCTCCAAATCCAATGCGAGGTGTGCCAGACGGAGACCTTCTCCCGGGTGGACAAGTACAAGGAGCACCTCCGCGAGCACGCCAAGCTGACGTTGTACAAGTGCGTCTTCTGCGACAAATCCTTCAGCGACTCCAGCAACTTCTCCAAGCACAAGAAGGTCCACGGCACCACGTACTTgcagtgcgacttctgccagaGGAAGTTCAACTCGAAGAGGAGCCTGGCCCAGCACATGGAGTACCACATTAAGAACACGCCGCTGCGGTGCAACCATTGCGACCGGCTGTTCCACCTGCCCGCGCTGCTGAAGAAGCATGTCAAGTGCACGCATAGACCTGAGCGCGTCCGCATCCGGTGCCAGTTCTGCCAGGAGTACTTCGAAACGCTGAGAGCGAAGTGGGACCATCAGTGGCAGGTACATCGCGTGAGAAAAGTAATCGTAGACTGCCTGCTGTGCGGCGCCAAGTTCCGCAAGTACTCGGAGCTGAAGCGGCACTGCAAGACCGCGCACCAGATCGACATCCCCAGGGCGGCCAGGCTGCTCAACTAG
- Protein Sequence
- MYMQEVIISSPVSHPVLLLPKRCTTLLTNCGPDDTLFINLNISSDDTDGNKTIIYSGFCNVKVLEDETNDDRYTFDCDNISRQVIGSDFPGENYADVQSQVWIDPARSPYVYNNYDVIEPERCYPQESNFITVEQHNTYVTQNIYNPNDVLQYSPVTEFENKSNSSGSGNETTIDESNQDSSMSEEFDCGVFLSQLPEEIMLENENRAREELKYIGLQSENNALKQLMSPDIQAMSKQQKTILYVGHGTEYNENAYNITGSSPQIKSITRGRDNEVMQISEHLNREEYKCDDCEEIFDCMSDLKKHTQHTHKSVSTPHEAPMFNFTCRKCGKVLKSEEKYETHCRGHGDPEVECDVCFKVFASKFTLRNHKKLHQKQNNCSFCKKSFGSKRELKVHTAKSHHLYKCDSCDYAVADRPQLKKHRASHKPKGTSYLVGDNFVEPATSKANRGTVVDYTFEHEETSTKVDDLEEPDAVLARVMSNKIFLLHSKNAGRYSNKKKCDVCHKRFDRISDLKRHLIEHVIRSTLAKTPVGSNGVLQIQCEVCQTETFSRVDKYKEHLREHAKLTLYKCVFCDKSFSDSSNFSKHKKVHGTTYLQCDFCQRKFNSKRSLAQHMEYHIKNTPLRCNHCDRLFHLPALLKKHVKCTHRPERVRIRCQFCQEYFETLRAKWDHQWQVHRVRKVIVDCLLCGAKFRKYSELKRHCKTAHQIDIPRAARLLN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -