Ehyp004002.1
Basic Information
- Insect
- Elymnias hypermnestra
- Gene Symbol
- -
- Assembly
- GCA_015832385.1
- Location
- JACTOM010000044.1:270656-286446[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.031 2.5 9.4 0.2 2 23 145 167 144 167 0.95 2 16 0.018 1.5 10.1 1.0 2 23 405 427 404 427 0.96 3 16 0.04 3.2 9.0 0.1 1 20 435 454 435 456 0.95 4 16 0.017 1.4 10.2 0.4 2 23 466 487 465 487 0.94 5 16 3.9 3.2e+02 2.8 0.5 1 23 503 526 503 526 0.87 6 16 0.0032 0.26 12.5 4.0 1 23 535 558 535 558 0.94 7 16 1.1 88 4.5 0.5 3 23 636 657 634 657 0.90 8 16 5.7e-05 0.0046 18.0 1.8 1 23 691 713 691 713 0.96 9 16 7.9e-06 0.00064 20.7 1.2 1 23 720 742 720 742 0.98 10 16 9.6e-05 0.0077 17.3 2.3 1 23 747 769 747 769 0.96 11 16 0.027 2.2 9.6 2.0 1 23 775 797 775 797 0.98 12 16 2e-06 0.00016 22.6 1.4 1 23 803 825 803 825 0.98 13 16 4.9e-05 0.004 18.2 2.6 2 23 832 853 832 853 0.97 14 16 0.00063 0.051 14.7 0.3 2 23 861 883 860 883 0.97 15 16 0.0022 0.18 13.0 1.1 1 23 888 910 888 910 0.98 16 16 0.29 23 6.3 4.4 1 23 916 939 916 939 0.97
Sequence Information
- Coding Sequence
- ATGGCTTCTGATGAGTCTGATGATGAGCCACTATCAGTATTAGCGGCAGCTAAGAAATTGAACCCAGAAACCGATGATCGAGACTCAGACAGTGACTATGAAATgcacaaaaagaaaaagaagaagaaaaagaataaaaatgcaaatgcACCTTTGAAAAAACTTGGTGTAACCATAAAACTTAATCGTAAATTAAATAGTCTTATCACGCAACCGGTAATAGCAAGGCCTACAGACGTATGGCTTtatttgaaagatttaaatcCAACAGGACCGTACAGCTGCTTGCTGTGCCCCGATTGGTTCATAAATCGTTCCAAAATGATATTACATTATTGTTTGAATCATAAGAAGGATTTCTGTGGCATTTGCAGGTATTTTGTCCCTGATAGAGAAATTTGGTATTCTCATGAGCAATTTCATTCACCATGGCCATGCTCGCAATGCGTTGGGACATTTCCCACAGAAAGGCTATTGCGTCACCATCTTCAAGTTGTTCATAATCTGGTTCACTGCCGACTGTGTCATTTCAGAGTTTCGGCTGATGAACATTACAATTCACATTTATTCCAAAAACACAATGTCACAAATATAGCCGCACAAGATGGAGaagtcttctgggagtttgatTTTGAAGGATCTGATAAATTTTTGTGCTTACTATGTTCAAAGTCTGATAATTTGGTGACTGCATTTTTTGGCCATTACATGGGCATTCatcattttactttaaaatgtatgacAAATTTAATCGCAGGAAAGAACACACCTTTTACGGTAAATGGGGCTGAAGTTACCAATCGGTTTCTTCATGATGCCCTGAAAGAGTATGGTAAACTTGGTTATGTGGATCTCGAGCCCAAGGTTTTTGAACACTTTCAAGAACAGGAGGATGTTAAACCTCCTGCTGTAATACTTCCTGAGGTCAAAGAAGAAATTGTCAGCGAAACTGAGATAGAAGAGAAAATAGAGGAAGAGAAAATAGAGAAAGAGAATGAGATTAGCGAGAAAGATGAGAACAGTCAAAATGATGAAACCATAGATTATAAAGGTGAAGAAGACTTTGATATTACACACACAGAGGTTATTCTGCTTGAGAAATGCTATTATGATTATATAGATAAAGCTTTGAGCGATATTAATGATAAAACTGTACCGAAAGTGTCTCACATAGATTATGAAAAGATTAAAGGAGATATTGAGCTTGATGTTGAATGCTCACTCTGCAAAACTAGGTATGAGAATGCTCAGACATTCACAACACATTTGAACAAAATGCATAGTGTTAAGACAGTGCCTTTATTTTCCTGCAGAGTTTGCGCTACAACTTTTGACACATATATTGAATTAACGAATCATATAGCAGAGGAGTTAGGTGATTTTGAAGATTTATGGATGTGTCAGTTTTGCGATAAAGAATTTGATAATCGAGAAGAAACCAGAATACATTTGACTGAACACTGGACAGCATTGGAATATGACAATTGTTTCAGCCCACATCTGGGATTCAAGTGTAAATTTTGCCCAACTTTATTTTGGAATGAGGTGGAAAGGGAAACACATCAAATCCGAGtacattttactaaatataaagatcaattTTACAAATGTGAAAGCTGTTCTAAGACATTCAGTGATAAGGTCTGGTATATCCATCATCATCTAGAAAACCATATAAAAGAGGAAGAGCCGCAGAACTATCTGATAAAGTGTTGCCTTTGTTGCGCAGTGGAGTccaattttgataaaatgaGGAGCCATTTTGAGAAACAGCATCCGGAGATCAGGAAACTGTACTGCTCTTTAGATGCCTGCATGTTTAAACCATTGAGCCATAGGAAATCCTTTAAATTACATGTAAagATGATCCATGGTCCATCAGCTCGTTTGGATAAACCGGTTAACTGCAGTGTGTGCAGCAGGGAATTTGTTAGTGCACGTGCATGCAGCACACACATGGCACAGGTGCACGGCCCAGGCAAGTTCAAATGCAAACTTTGCAAGGATGTACTGCGGACCATTGATGAGAGAAAGCTCCATTACCTACTATGTCATCCTGGTAGGCATCCCTTCGAGTGTTCGGAGTGTGGCAAATCATTCCAGTACAAATCCTCACTATATATGCATAAGCAAGACCACTTACCAAACAAACAGAGTTACACTTGCAGCTACTGTTCTAAAGTTTTTGCGAAAAAGGACTCGTATCGTGAGCATATACAGATCCATGAGGGTCCGAGGCATGCATGCTCGTACTGTCCCATGAGGTTCGTGCAACGGTCCAATATGCTAAGACATGAAAGGCGCCATACTGGTGAAAGACCTTATAGATGTATCCACTGCCCTCGAGCATTCGCTGACAAGGGTGCTTGCACTGCGCATACACgGACCCATTCGAGAGATACATCCTATGCCTGCCTATATTGTGGACAGACGTTCGTGCAGAAATCGAAGCTCACTTACCACATAAGAAAACATACGGGAGAAAatTTGGAGTCGTGTACAGTTTGCTCGAAGATGTTCACAAGTGCGTGTGCGTTGAGGGAGCATATGAAAACGCACGTTGAGAAGAAAAAGATTGTCAAATGTCCCCTATGTGataAAGGCTATCAAGACGAGCGTTATATGTTACGTCACTTACGCACTCTACATACTAAGTCACAGTTCTCGTGCCCGTTGTGTCATAAGTTACTCACTAGTGCCGCCGGGTTGCGACATCACGTCATTACACACAGCGACATCAACACCTTCCGGTGCAAATGTTGCCCGAAGTCCTACGCAGTCAAGAGAACAATTTTAAAGCATTTACGCAAACGACATGGCTTAAGAGGCAACGAAGTAAACATAAAGGATTTCTTCACCCGCTTGGAGCCTAGGGAATGCAAGCTGAATCTAGACGAGGCAACAATGACGAGTATATTTGGACCTCCTAAGCTCAAAGTACCCGAGATCTTGATCAGTGACTTCGTGAAGTTCACGAAGGAAGCGGTTAAAGCTGTTGAAAATAAATCCAATACACAACCTTCAGAGGATGAATCAGATGAAGACAATGATAATAATGATGCCAATGATAGTAATGATGATAAAGACAGCAATGATGAGAAGGATAAAGTAGTGAAGATAAAGCAGGAAGTTGAAAGCGGTGAGGAGGAACTGGAACCCACTGACTTTGTCAGTGTTAAAATTGAACCCATGGATGAAGATAATGATTAA
- Protein Sequence
- MASDESDDEPLSVLAAAKKLNPETDDRDSDSDYEMHKKKKKKKKNKNANAPLKKLGVTIKLNRKLNSLITQPVIARPTDVWLYLKDLNPTGPYSCLLCPDWFINRSKMILHYCLNHKKDFCGICRYFVPDREIWYSHEQFHSPWPCSQCVGTFPTERLLRHHLQVVHNLVHCRLCHFRVSADEHYNSHLFQKHNVTNIAAQDGEVFWEFDFEGSDKFLCLLCSKSDNLVTAFFGHYMGIHHFTLKCMTNLIAGKNTPFTVNGAEVTNRFLHDALKEYGKLGYVDLEPKVFEHFQEQEDVKPPAVILPEVKEEIVSETEIEEKIEEEKIEKENEISEKDENSQNDETIDYKGEEDFDITHTEVILLEKCYYDYIDKALSDINDKTVPKVSHIDYEKIKGDIELDVECSLCKTRYENAQTFTTHLNKMHSVKTVPLFSCRVCATTFDTYIELTNHIAEELGDFEDLWMCQFCDKEFDNREETRIHLTEHWTALEYDNCFSPHLGFKCKFCPTLFWNEVERETHQIRVHFTKYKDQFYKCESCSKTFSDKVWYIHHHLENHIKEEEPQNYLIKCCLCCAVESNFDKMRSHFEKQHPEIRKLYCSLDACMFKPLSHRKSFKLHVKMIHGPSARLDKPVNCSVCSREFVSARACSTHMAQVHGPGKFKCKLCKDVLRTIDERKLHYLLCHPGRHPFECSECGKSFQYKSSLYMHKQDHLPNKQSYTCSYCSKVFAKKDSYREHIQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYRCIHCPRAFADKGACTAHTRTHSRDTSYACLYCGQTFVQKSKLTYHIRKHTGENLESCTVCSKMFTSACALREHMKTHVEKKKIVKCPLCDKGYQDERYMLRHLRTLHTKSQFSCPLCHKLLTSAAGLRHHVITHSDINTFRCKCCPKSYAVKRTILKHLRKRHGLRGNEVNIKDFFTRLEPRECKLNLDEATMTSIFGPPKLKVPEILISDFVKFTKEAVKAVENKSNTQPSEDESDEDNDNNDANDSNDDKDSNDEKDKVVKIKQEVESGEEELEPTDFVSVKIEPMDEDND*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -