Ehyp008775.1
Basic Information
- Insect
- Elymnias hypermnestra
- Gene Symbol
- -
- Assembly
- GCA_015832385.1
- Location
- JACTOM010000103.1:496132-507747[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.36 29 6.0 0.0 1 23 376 398 376 398 0.97 2 10 0.051 4.1 8.7 0.3 2 22 426 446 425 446 0.95 3 10 0.00029 0.023 15.8 0.4 3 23 468 488 466 488 0.96 4 10 1.1e-05 0.00086 20.3 0.8 1 23 492 514 492 514 0.97 5 10 0.077 6.2 8.1 0.4 1 23 519 542 519 542 0.94 6 10 0.16 13 7.2 0.8 1 23 548 571 548 571 0.93 7 10 0.00029 0.024 15.8 1.3 1 23 578 601 578 601 0.98 8 10 8.3e-05 0.0067 17.5 3.5 1 23 607 629 607 629 0.98 9 10 2.8e-05 0.0022 19.0 5.3 1 23 635 657 635 657 0.96 10 10 4.3e-06 0.00035 21.5 1.0 1 23 663 685 663 685 0.98
Sequence Information
- Coding Sequence
- ATGAGCAAAGCAATAGAGGGCAATAAGAATTTGTACGCGGAATGTGATCATATAAAGAGAACAAAACCCGACGCTAAAGTTACTGAAGaaaTAGCAAAAGAAATCGGTCAAAACTACAGAACTATGCCGACGTTTGAAAAGGGTCTGtttgaatatatattcaaaGACCATTATTCGTTGCATCGTAATGAATTGCTGAAATGTCGATGGTTGCAATACAAGAAGCACATTGAGGAGAGAGTGTTTGCACCGTTCCAGTTCCCTTGTATAAGagATTTACATTTCCACAACGGCTGCATACGTTTTATGGCGTCCgaatcgatatatcgatatccGGAACATCGTATGAAACTGAAGCCGGGACCGGGTGTCGACTTCCGCGGACAGATGCCCATCCCTCAGGAGCTACTGATGAAACGCGGGAAAATCGAAAAGGAAGATGgcgAGACTCTGCCAATATTCGGCATATGTAGTTTATGCCTTATAGAAGGCGTTGTTAAAAGTATGCTAATTAAACAAAACACGGATAATAAGACGGAATCTTATACGGATATGTTGTTGAAGTGTTTCTCTATAGACatGGCTTTACTAAACTTAGATGATACTAAACAGCTGATATGCAACACATGTATCACACAATTGGAGTGTTGTCTCAACTTCAAGGAGCAGGTGGAATATTCGTTGAAGTCATTGGAGGCAACTATCAAACTCAAgaaAGCAGAACAGCAAGAGAAGGATACAATAAAATTGGAAGctgaaaaaaacaaaagtaatgATGCTAAAAGGAAATCATTGACCGATATGAAGAAGGAACTGGTTTCAGCAATGGGCCTCTCGAAAGACAATTTTGTGGAAGATGATTCAGATAATCCCAGATTAGTATTTTCCAATGTCAAACAGGAATCATTAGATGATAGTGACTTCGATGACCATACATTGCTCAATgacttattaataaaagaagagTTAGAAGAAGAGTACAGACCTAGGAAAACTAGAAAGAAACCCCTCTCCACAACAAAAAAGAAAGTGTCATACTCCTCGAAAAGGCAAGCAGATTTGCGTGACACAGAGAACATGTTGCAGTCTGGACTATTCCCatttaaaatcaacaaaaatcAGATATACTCTTGCGCGGTGTGCCCGGAGAAGTCCACCATTTTGGACGACATAAAATCCCATATAATGGAGCACAACATCTCAAATATAACGTTGGCGTTCAAGAAGATGCTCACGTCGAACCTCCAGACCTTCTACAAATCCTCGACGAAGTTACGCTGCAAGTTATGCAAGACAGAGATACAGGATTACGATAGTCTAAAAAGGCACATAAACACCTGTGTGAATTCCAGTCCGCGCTGGAACAACCTTCCGTTCAAACTGGAGAAAGACCAGTTGGACTGTCCCATTTGCAAGAAGACCTTCTTGAACTTCGTCAGCTTAAACACTCATATGAACGTCCATTATCCGAATCACATCTGCGACAGTTGCGGGAAAGCTTTTGCTTCAAAAGCCAGGCTTAGAGGTCACATGAGGACCCACGAAATAGGGGACTTCCCCTGCAGATACTGCGACGCTGTCTTCGACAGAGTCACCAAAAGGGAGAACCACGTGTCCAAAGAGCACAAATCCGGAATAAGATATTCATGCAAACGATGCAATCTATCCTTATCCTCTTTTTACGCTCGCCAGAAGCATTTGGCCGAAGTTCACAATGAGGAACTGAAAAGATACAAATGCAAGGCCTGTACCCAAAGTTATATAACTCCTGGGCATCTATCAAGCCACGTTAGGAGGGATCATTTGAACGAGCGCAACCACAAATGTTCCAAGTGTGACCTCGCGTTTTACACACGGAATTCTTTGAAGATGCATATGATAAAGCATGATGGAGAAAGGATACATGCATGCAATATATGCCACAAGTCTTACCAGAGGAAGAAGACTTTGAGGGAGCATATGCGAATCcataataatgataaaagatTCATTTGTCCAGTTTGCGGTAGGGCATTTACACAGAAATGTACTTTGAAAGGTCATTTGAAGGTCCACGAGAGGAAGATGGATGGAGAAGAGAGAGTCCCGCAGCCTTTGCACTCGATATAG
- Protein Sequence
- MSKAIEGNKNLYAECDHIKRTKPDAKVTEEIAKEIGQNYRTMPTFEKGLFEYIFKDHYSLHRNELLKCRWLQYKKHIEERVFAPFQFPCIRDLHFHNGCIRFMASESIYRYPEHRMKLKPGPGVDFRGQMPIPQELLMKRGKIEKEDGETLPIFGICSLCLIEGVVKSMLIKQNTDNKTESYTDMLLKCFSIDMALLNLDDTKQLICNTCITQLECCLNFKEQVEYSLKSLEATIKLKKAEQQEKDTIKLEAEKNKSNDAKRKSLTDMKKELVSAMGLSKDNFVEDDSDNPRLVFSNVKQESLDDSDFDDHTLLNDLLIKEELEEEYRPRKTRKKPLSTTKKKVSYSSKRQADLRDTENMLQSGLFPFKINKNQIYSCAVCPEKSTILDDIKSHIMEHNISNITLAFKKMLTSNLQTFYKSSTKLRCKLCKTEIQDYDSLKRHINTCVNSSPRWNNLPFKLEKDQLDCPICKKTFLNFVSLNTHMNVHYPNHICDSCGKAFASKARLRGHMRTHEIGDFPCRYCDAVFDRVTKRENHVSKEHKSGIRYSCKRCNLSLSSFYARQKHLAEVHNEELKRYKCKACTQSYITPGHLSSHVRRDHLNERNHKCSKCDLAFYTRNSLKMHMIKHDGERIHACNICHKSYQRKKTLREHMRIHNNDKRFICPVCGRAFTQKCTLKGHLKVHERKMDGEERVPQPLHSI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -