Ehyp006638.1
Basic Information
- Insect
- Elymnias hypermnestra
- Gene Symbol
- -
- Assembly
- GCA_015832385.1
- Location
- JACTOM010000068.1:2721012-2744921[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.042 3.4 9.0 0.2 1 23 479 501 479 501 0.92 2 18 0.021 1.7 9.9 0.0 1 23 511 534 511 534 0.95 3 18 0.02 1.6 10.0 1.6 1 21 620 640 620 641 0.94 4 18 0.041 3.3 9.0 3.8 2 23 704 725 703 725 0.95 5 18 1.9 1.6e+02 3.7 0.5 1 23 737 761 737 761 0.90 6 18 0.0001 0.0081 17.2 0.7 2 23 768 791 767 791 0.97 7 18 0.08 6.4 8.1 0.2 1 23 797 819 797 819 0.93 8 18 0.0025 0.2 12.8 3.3 1 23 825 847 825 847 0.98 9 18 0.11 9.1 7.6 0.0 2 19 858 875 857 878 0.89 10 18 0.1 8.4 7.7 0.2 1 23 956 978 956 978 0.98 11 18 2.4 1.9e+02 3.5 7.2 1 23 985 1007 985 1007 0.95 12 18 0.0072 0.59 11.4 2.4 1 23 1042 1065 1042 1065 0.95 13 18 0.0056 0.45 11.7 1.2 1 23 1072 1095 1072 1095 0.97 14 18 0.026 2.1 9.6 0.1 2 23 1117 1139 1116 1139 0.96 15 18 0.26 21 6.5 2.8 3 23 1162 1183 1160 1183 0.94 16 18 0.0018 0.15 13.2 0.5 1 23 1195 1217 1195 1217 0.97 17 18 0.00014 0.011 16.8 0.1 1 23 1223 1245 1223 1245 0.97 18 18 0.00016 0.013 16.6 2.5 3 23 1253 1274 1253 1274 0.97
Sequence Information
- Coding Sequence
- ATGGCTGAACCACTACAACCACTAATTCTTTGTATGGAGAACATCAATGGAGATGAAGTGGCAGTTAAGATTGAACCCCTGGACACTTTCCATGAATTCTTAGAAAAagcaaaATTGCTCTTAGGTTATGAAGTTGATTTAAACTCAATAACTAGCGACCAGCCTGTTTCTTTAgacgaaaatatttataatttccttttaaatgCTGAGCAAAACTTTAAAGGGTCGATTCTTAATCCTGATAACTTTGATGAAATATTAGAACAATCTAATGAGGCAGAtgatttagtttatatattagatgatGGTACGCAAATACGCGCCTCACAGATTCAATTTGACAATGACGATCCGCTTGTAGATATAACATCTGAGGAAATaccttttgttaaatttaaagatgaTAGTGCAGATGAGACTGACATCAATGATCTAGAAGCTTGTACTACTAAAAAAATCAGTATAGTCGATAGCCCTGTACCGCGATGGTCAACGCAAGGTAGCCCAAAATGTAGTTTTGCTAACAGCCTTCCTTTTAACTTAGTCTGCAACAACACATCGAATTTCGAAGCACAGTTTACGAAATACCTTGAATCTAGTACAAAAACATacactaatttaaataatgctACACGAAATAAATCTCCTCGCAGTTTAATAagagataattataaaaattatgatgATTTACAAAGTCGCAACGATGGGTTTTTCACTAGAGAAGATATTCTAAATATGTTTAAAGATTCTCCAGTGACTCCTCTTCCATATGATGATAATCAATCAGAACAGCGCAGACATGTAAGGAAAACTGATCCATCGAGACTTGTCTATAAGAATTGGAATGCAAAACCTGTTATTGAATCGGATTCTGGTTTAGAAAAACAAGGTTGCTTCATTTGCGGCAAAATGGTTGATAATATGGAAAAGTTATACTTGTTTGATAAAGAAGATCAAATGCTTCATAGATGCgaacaaagaaaatataatacgcaattaaaaataatttgcaaccagtgtttgactgaaaattttAAGCCGAGCAGATTGAAAAGTCCAAGTCAATCATTGGAAAACGATGAATATTTggtcattaaaaataatcaacAATTTATCTTCCAAAAAATAACTAATGttaatttgaaaaacaattattatatggATACTGATAAGGTAATGCATGATGCAAATAAGGAAAGCATGGAATTTGTGAAAGTAGAAATTGGTCCCGATGGCGAGATTATTACGAAACCTATAGATAATGATGTGAAGTCGGATGATGTTGTTATAGTAAAGGGCGAAAAAAAGGACAGTTCAAGCGACGTGGAGATAATTGAGCCGGAATCGGAAATTGACGTGGAAAATATCGAAGACGTTGACGAAGATGTAAAGGTATTTTTGGGCAAATACCAATGTGCTGTGGACATTAAGGATTACAAATGCAGGTTCTGTGAGAAAGAGTTCAAGGATCTACCAGAAGTCATCAACCATGGGGAAGAGCATAAACATGACATTGAGAATGAATCAGTTTTCCCTTGCCCCCTTTGCGATTATGGTTATGCTAACATAAAATGGTTGACGGGACATTTGAAAGCGGCTCACGACTCTCTGAAGACAGAAACAGAGGGAAGAAATCAACAAGACATCGTTGgtaAACAAGAAACAGAAGAATCCAATGAAAATAATCCAAATGAATCGACAGAAGACAACGCTATATCGAATGTTGAAAAAGAAGCACAAGTCAGTAGTGATGAATCTATATGGATAGTCCAAACTGGTGATGATGATGCCACTGAACAAATACAGAATTTATTAAAGGTATCAGAATCGAAACAAGGAATTAACGACTTGaagaaatacaaatgtttcaaatgcagCCAAATTTTTCCAAACGCTGAAAGCTTAGCAACACACAAGTGTCGAAAGCGTGGGAGGAAAAGACAGTTTTTCTCAAAAGAAGAGTCAGTCATATATGTTCCATCCCAAGAGGATTTTATTAAGcgCGCTCAAGGACGTCCTCGTCCTGTCGAAAATAATGCAGACAATGATCTTTTAGTTGTGCGAACCCGTAGAAGAAAAACTCGTGAGGCAAGTAACCCTCAGATAGTCACTTGTCATAACTGCAATGAGTCGTTTACGTCTAAAGTCAGACTCAAATTCCACATgCAATTTCATGAATCAACGAGTCTACTTTTATCTGATGGCCAGTATGTTTGTGTGGAATGTGATGACGCTAAGTTCCCCACAGAAACAAATCTTTTTGACCACGTGCATTTTCAGCATAACAAGCAGAAACGATGGCAGTGCCCTGTCAAAGACTGTGGAAAGACTTTCTTTTTAAGGGCGACATTGACGAAACACAGTCGTACGCACACAGACACAAGGCGTTACGTGTGCGTTACTTGTGGGAAACGGTTTCTTGACAAGCAAACTTTAGATGAACACGGTGTTACGCATCTACAGATTAAACCCTTTCAATGTCATATTTGTCTCAAACAATTGACGCGAAGGTCTCGTCTCCGTATGCATTTGAGAGCTCATGAGGAGGAACTATCGCCAGCTTTAGTATTGGTTTGCTCTATATGCAGCAGAGCTTTTAGAGACAACGTTGATGCTCAGgaacACGCCACAAAATCAACAGAATGTCTCGAAGAATTTACCAGTGAGCTCAAAGAGGAGGCCGAAACTACAGAACAGTTGTCACCCACAAGTGGGATTGTGAGACACACTGTACAAGTAGTCGAATTTCCTCGCCACAATGCACTGATACACAGAGAAGTTAATAACGACGAGAGTGAGAAACTTCTATCAGCTTTAGATGATGCCGCAAGAAGTATAATTCGGGTGGTCAATATCGAGAAAGCTTTTCGATGTGAATATTGTGAAGACGTTTTTTACTTAGAGGATCCACTCAACAATCACAGAGCCACTCACAAAGGAGTAAAaaatcctttcacttgccataTTTGCAAAGTTAGCTTTGCGACATACTCAAGATGCACAACACACAAAACCACCCATGGTTTTTACAAGCGAAGTGCTACAGAGACACGTACTGAGGGACGCTCTGGTCCAGCGAGCGCTGGCATACTCGGCTATGGAGGGTTCCCTGTTGTAAAACATTTCCTTTGCGAGGACTGTGGGCGATCCTATCTGCATTGGACGTATTTTCAAGTACATCGTCGTATGAAACACgcaaatgaaaattatattttcaaatgtaatCAGTGCGAAATGACATTTCCTAATAGCTGGAGTGCCACTTATCATCGGAAGAAAGTGCACAGTAAAAACGGCCAAGACGAAAATGGCGGCTTTACGAAAATTATTCGAGAAAACTATagaattccCTGCCGTGATTGCGACGAAGTTTTGCCGAATAAATTGGCGCTTTACAAGCACAGGAAGAAGGAACACTGCGATGACGCATTGTTAGACAAAGATGgaGGTTTTACTGATCCTGACGATCCCGAGACAACAATTTGCAATAAATGTGGACACAATTTGCATAACGTATCCGcattacaaaaacataaaaaAGAAGTGCATGGGTGTGATGCCGATGAGGCACGTGCTCGTTCTCACACCTGTCCCGTGTGTACGCGCGCATTTCGTTCAGCGTCAGTACGCAATGAGCACGTACGTGTGCACACTGGTGAGCGGCCCTTCCCTTGTGATGTGTGTGGAGTCGCTTTTCGGAGgTCGACAGCTATGCGAAATCATCGGTTAATACACAGCAGTAACCGCGCATGGGGCTGCAACAGGTGTCCAAAGCGATTCCGTATTAAATCAGATCTGAGGACTCACATGAGGCTTAAACATCCTGCTCATCTCGCTGTTATAGAGatcGAGGGTACGAGTTGCTCACCAGAAGAGGTTTTAAAACACCTTAATGCTAACAATATAAGCCAGGATAAGGTCATTGAAATAACTATGATTTCGTTTCCTAAAAATTCTACTAACGTGGTCCCGAACTCGATGCGTGCTTTGTCAATGCTTAGCGATGTACCGAGAACACAAATTCCTTGCAATTGGGACACCACTGGACCATCGCAAGGACTAATCGGTGATGTTTTTCAACCGACTCGTCGTGGAAGGGGCATAGCCAAAGCTCCTAGGAGACCTGCTATCCTGCAACGAGGAGAGGAAGCACCCCAGGACAATGGCTACATGCCTCTTAATGTTGAAACTGAGAATTTATCAACGCTAAATGTTCAGCTATTGCTTCAAGATAGTGCTTTAGTTAACGGAAATCAAATGGTTCAACTACAACTAGATGATGGGATGttattagaataa
- Protein Sequence
- MAEPLQPLILCMENINGDEVAVKIEPLDTFHEFLEKAKLLLGYEVDLNSITSDQPVSLDENIYNFLLNAEQNFKGSILNPDNFDEILEQSNEADDLVYILDDGTQIRASQIQFDNDDPLVDITSEEIPFVKFKDDSADETDINDLEACTTKKISIVDSPVPRWSTQGSPKCSFANSLPFNLVCNNTSNFEAQFTKYLESSTKTYTNLNNATRNKSPRSLIRDNYKNYDDLQSRNDGFFTREDILNMFKDSPVTPLPYDDNQSEQRRHVRKTDPSRLVYKNWNAKPVIESDSGLEKQGCFICGKMVDNMEKLYLFDKEDQMLHRCEQRKYNTQLKIICNQCLTENFKPSRLKSPSQSLENDEYLVIKNNQQFIFQKITNVNLKNNYYMDTDKVMHDANKESMEFVKVEIGPDGEIITKPIDNDVKSDDVVIVKGEKKDSSSDVEIIEPESEIDVENIEDVDEDVKVFLGKYQCAVDIKDYKCRFCEKEFKDLPEVINHGEEHKHDIENESVFPCPLCDYGYANIKWLTGHLKAAHDSLKTETEGRNQQDIVGKQETEESNENNPNESTEDNAISNVEKEAQVSSDESIWIVQTGDDDATEQIQNLLKVSESKQGINDLKKYKCFKCSQIFPNAESLATHKCRKRGRKRQFFSKEESVIYVPSQEDFIKRAQGRPRPVENNADNDLLVVRTRRRKTREASNPQIVTCHNCNESFTSKVRLKFHMQFHESTSLLLSDGQYVCVECDDAKFPTETNLFDHVHFQHNKQKRWQCPVKDCGKTFFLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEELSPALVLVCSICSRAFRDNVDAQEHATKSTECLEEFTSELKEEAETTEQLSPTSGIVRHTVQVVEFPRHNALIHREVNNDESEKLLSALDDAARSIIRVVNIEKAFRCEYCEDVFYLEDPLNNHRATHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSATETRTEGRSGPASAGILGYGGFPVVKHFLCEDCGRSYLHWTYFQVHRRMKHANENYIFKCNQCEMTFPNSWSATYHRKKVHSKNGQDENGGFTKIIRENYRIPCRDCDEVLPNKLALYKHRKKEHCDDALLDKDGGFTDPDDPETTICNKCGHNLHNVSALQKHKKEVHGCDADEARARSHTCPVCTRAFRSASVRNEHVRVHTGERPFPCDVCGVAFRRSTAMRNHRLIHSSNRAWGCNRCPKRFRIKSDLRTHMRLKHPAHLAVIEIEGTSCSPEEVLKHLNANNISQDKVIEITMISFPKNSTNVVPNSMRALSMLSDVPRTQIPCNWDTTGPSQGLIGDVFQPTRRGRGIAKAPRRPAILQRGEEAPQDNGYMPLNVETENLSTLNVQLLLQDSALVNGNQMVQLQLDDGMLLE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -