Ehyp022908.1
Basic Information
- Insect
- Elymnias hypermnestra
- Gene Symbol
- -
- Assembly
- GCA_015832385.1
- Location
- JACTOM010000929.1:8475423-8484798[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.034 2.8 9.3 0.0 2 23 196 218 195 218 0.94 2 12 3.9 3.2e+02 2.8 0.3 6 23 228 245 226 245 0.92 3 12 0.09 7.3 7.9 6.9 1 19 278 296 278 301 0.95 4 12 0.78 63 5.0 0.4 6 23 311 328 309 328 0.95 5 12 0.023 1.9 9.8 1.7 3 23 336 356 334 356 0.96 6 12 4.6e-05 0.0037 18.3 3.3 1 23 364 386 364 386 0.97 7 12 5.3e-05 0.0043 18.1 0.4 1 23 395 418 395 418 0.98 8 12 0.00024 0.019 16.0 0.2 1 23 424 446 424 446 0.97 9 12 1.3e-06 0.0001 23.2 2.2 1 23 452 474 452 474 0.98 10 12 0.0012 0.098 13.8 0.7 1 23 479 501 479 501 0.97 11 12 3.2e-06 0.00026 21.9 4.2 1 23 507 529 507 529 0.97 12 12 0.00015 0.012 16.7 2.9 2 23 536 558 535 558 0.95
Sequence Information
- Coding Sequence
- ATGGCTCAGAATATAAAGGATTTGTGTCGACTCTGTGCTAAAGTTGAAGGGTTCACCAAAGATTTAAttgatgaaaataataaaaatattcttaaaatggTACAAGAATATGTACAGATATCTGTACATGAAAGTGATGATTTACCAACTAAGGTGTGTTTAAATTGTGAAGAGAAAGTAGTTTCATTTCAGCTTTTTGTCTTAGAATGTCATAAAGTACAGGAAACATTGAAGAAAATGTTTTTAGAATCAAGCATTACATACCCAATCAAACTTGAGGATGAATTGTCTGACTATGCTCTTCCACCAATTAAATCAgaggttAAAATGGAAATGATTCCTGATGACTTAGTTAATGCCATTAATAATGAAGACTCACTAGGAGATGATTTTGATGTAGACTATAGCAACAGCGATGTAAAACTAGACAGTGATGGTGATTTAAGTGATGTTGTATCATTAGCTACTCTTAAgaaatcaaaagaaaaaaaaactaaaagaaagcctataagtgaggaagctaaaattgaatttaaaaatatattaaagaaatccAACTTGAATGTTAAAGATTTTGTTAAATTAGAATGTAATATGTGTGAAGAGGCTATGCCAACATGGAGTGGCTTGAGAGTTCATTACGCCAAAATCCACAAAAGCAAGCCGATGGTGTTTTGTCTATGCGGATTCGTTATCAGATCTAAAAGTGTTCTTTACAAACATGTATCGGACCATAGGATAGAGAGTCGCAAATTGAAAAAGAACGACTCCGACTCGGAGAAAGGTGAAGATGTCAAATATTCAAGTTTAAACGTCAAAGATTTTGTGAaTTTCACGTGTACTTTCTGTCAGAAGGAATGCAAGAGTTGGTATAGTCTGAAGTCTCACTGCGAAGGGAAACACAACACCACACCAGTTGTTCGCTGCAGCTGTGGTATCACTTTGAAATCCAAATCAGTTTTGTATAAACATGTACAAGATCACAAAAATCCCAACGTTATCTGCTGTGATAAATGCCCGCGGATAACTAAAACGGAAGCTGCTATGAATAAACACAAAATGAGACATGTACCAAAGTCTGAGAGGAAGTTCTGTTGCGGTTCGTGTGACAAGGTATTCAATTCTAAGGATACACTCAAATCACACGAAAGATCCCATATACCGATcgaagaaagaaaaatatatcgCTGTGAAATATGTGATCTGAAATTTACAACTCGTTCGTCGGCAGCTTCGCACAAACGTGTGGTACATGAAAAGATCAAGAGTTACGTGTGCGACCTTTGCGGCTACGCTTGCGGCACTAACGGTGAGCTGCGGCAACATCGCGCAATACACAGCGACGACAAACCATACGTCTGCAGAACTTGCTCCAAGCCATTCAAAACATACTCAAATTTGAAGACTCATATGGATACACACGAGGATACGTCGTATGCTTGTTTCGTGTGCAGCCGTGTGCTTAACAGCCGGCGTACTTTGCGCAAGCATCTCCTGGTCCATGAAGACAAGTGTCGCCACGTGTGCTCTTACTGCAATAAAGCCTTCAAGAGGCGACAAACTTTAAAGGTACACATGTATACACATACGGGCGATAAACCGCTCACTTGCAAGTGGTGCGACGAGCGTTTCTCATACGCGTCGACGTTGCGCTCGCATCGACTGCGGTGTCATCCGGACAAAATGGCGGTCCAGTATTCATCCTATAACTCCCATGTGGCTATGCAAGAGGGCTACATAAAAAATGACACCGCTCCACTGAACATAGCGAAAACTGACGTCGAACCTATACAATGA
- Protein Sequence
- MAQNIKDLCRLCAKVEGFTKDLIDENNKNILKMVQEYVQISVHESDDLPTKVCLNCEEKVVSFQLFVLECHKVQETLKKMFLESSITYPIKLEDELSDYALPPIKSEVKMEMIPDDLVNAINNEDSLGDDFDVDYSNSDVKLDSDGDLSDVVSLATLKKSKEKKTKRKPISEEAKIEFKNILKKSNLNVKDFVKLECNMCEEAMPTWSGLRVHYAKIHKSKPMVFCLCGFVIRSKSVLYKHVSDHRIESRKLKKNDSDSEKGEDVKYSSLNVKDFVNFTCTFCQKECKSWYSLKSHCEGKHNTTPVVRCSCGITLKSKSVLYKHVQDHKNPNVICCDKCPRITKTEAAMNKHKMRHVPKSERKFCCGSCDKVFNSKDTLKSHERSHIPIEERKIYRCEICDLKFTTRSSAASHKRVVHEKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPYVCRTCSKPFKTYSNLKTHMDTHEDTSYACFVCSRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCDERFSYASTLRSHRLRCHPDKMAVQYSSYNSHVAMQEGYIKNDTAPLNIAKTDVEPIQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01151436;
- 90% Identity
- iTF_01017956;
- 80% Identity
- -