Ehyp008722.1
Basic Information
- Insect
- Elymnias hypermnestra
- Gene Symbol
- -
- Assembly
- GCA_015832385.1
- Location
- JACTOM010000103.1:206147-207940[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.22 18 6.7 2.3 1 23 25 47 25 47 0.95 2 16 0.56 45 5.4 0.1 3 23 77 98 77 98 0.93 3 16 0.0015 0.12 13.6 0.2 2 23 119 141 118 141 0.95 4 16 0.00043 0.035 15.2 2.1 2 23 147 169 146 169 0.95 5 16 0.0027 0.22 12.7 0.6 1 23 174 197 174 197 0.94 6 16 0.66 53 5.2 0.2 2 23 200 222 199 222 0.95 7 16 0.013 1 10.6 1.4 2 21 229 248 228 249 0.93 8 16 0.0018 0.14 13.3 0.7 1 23 307 330 307 330 0.95 9 16 4.3 3.5e+02 2.7 0.1 2 23 358 380 357 380 0.87 10 16 0.037 3 9.2 0.2 2 23 403 426 402 426 0.94 11 16 0.00039 0.032 15.4 0.6 3 20 433 450 431 454 0.90 12 16 0.051 4.1 8.7 0.6 1 23 459 482 459 482 0.97 13 16 0.00026 0.021 15.9 0.2 2 23 488 510 488 510 0.94 14 16 2.9e-05 0.0023 18.9 4.7 1 23 514 537 514 537 0.97 15 16 3.7e-05 0.003 18.6 0.4 2 23 544 565 543 565 0.96 16 16 0.0024 0.2 12.9 2.7 1 23 571 593 571 593 0.97
Sequence Information
- Coding Sequence
- ATGCGTAGACGGAAAAATCTACAGCTATTATTCAACAACACCACAATGATACCTTTCAAATGGAGGGGTCGTTATCTCTGTTTTTATTGCAGTAAAGATATGTCtgaatataacgaattaaagAAACATACGAAATCGCACGGGAATTGCTCTACTAAAGACCATTCTCTTAAAGTACTTAAAGGCGGGCAGAATATGGagattaaaatagatatatctGAAATAGGTTGCGAGATTTGTAATGAGGAATTTCCAGTGTTTGATGATATACTCAATCATCTATTCGTTAAACATAAGTTGGAATACGATAGAGATGTTGAAATGGCTCTAGAAGAGTATAGACTGATAGATCTCAGTTGCTTGATCTGCGGTGAAAAGTTTACGTATTTTGGATATTTAGTATCACACGTGAATAGTAATCATCCAAAGAATTGTCTGATTTGTGACAAATGCAATCAGAAGTTCAATAAAAAGAGAGATCTCTTCTCCCATATAAAAAACTATCACAGGGAAGGTGGATACGTCTGTGATGTATGTCCGCAAAGTTTTACTTCCCTGAACATATTAAGAAAGCATAGAACGAACAGACATCTAACCAGATGCAGcatatgctttttaaaattaccatCAGCAGTGCTCAAACAAAAGCACATGGAAATTGAACACCCAGACGACGGTTCGCTACAATGTGATATATGCTAtaaagatttccatacaaaacAGGGCCTAAAAATGCATTCTCGTAAATGCAAAGGTGATATATTCGATATAACGATTAAAAAAGAGGAATACGAAGCCATGGATTTAGACAATGGTTATGAAGGCGTAAAAAGACCGAGTGTTAAGCAAATACGTGAGAATATAGTGACTGTTATAAACATGTCTACGGCTGTACCTTTTAATTTCTATAAGAATAAATTCAATTGCTTCTACTGTTCCCAAGACTTCTCTGACTCGGATTCTATGAGAGAACACACGTTAGTTGAGCATCCAGTTTGTAATGTAAAGGAAAAATGCATAAGGAAATGTCGGGAATCCGTTGCGTGTGTAAAAATTGACATATCATCATTGTCATGCAAAATTTGCTTCGAAACAATGAATGATCTTGATCCTTTGCTGGATCATCTCGTAATCAAACATCAGGCTAATTACGATAAATCAATAACGACATGTCTACAACCTTACAAGCTAATCAAAGATCACATGGTTTGTCCAAATTGCCCCAACGAAGTGTTCCGCTTCTTCGGCACTTTACTAAAGCACATGAACAACGAACATACCAACAACAATATAATTTGCGTTTATTGCGGTCAAACCTTTAGAAGAGATCAAAATTTGAGGGTGCATATTTGGAGACACCATCGCGATGGCAGATTCAAATGCAGCATTTGCAATGCAGATTGCAATATACCCTCAAGACTTTATATGCACATGGCAAAAGCACATGGGGTTAAAGCAGCGAAGTGTCCCAAGTGTCCAGAAAGCTTTGCCACCCAATATCTACGGCAAAAGCACTTGATAGAGGCCCACGATTCTGGGCACAAATGCTCCTATTGCGGCAAGTTGTTTACCCGCAATTCCTTTATGCGTGATCACATTAGACGGACGCATTTGAAGGAGAAGAATGTTGAATGCTCCATATGTGGCATGAAGTTCTTCAATAACATTCTTCTTCGTCGACACATGGTGAAGCACAGTGGGGAGAAGAACTTCCATTGTGATATGTGCGGAGAACGTTTTTATTGGCGGAAGAGTTTGCGCACTCACATGGCTAAGCATAATAAGCAAGCGTGA
- Protein Sequence
- MRRRKNLQLLFNNTTMIPFKWRGRYLCFYCSKDMSEYNELKKHTKSHGNCSTKDHSLKVLKGGQNMEIKIDISEIGCEICNEEFPVFDDILNHLFVKHKLEYDRDVEMALEEYRLIDLSCLICGEKFTYFGYLVSHVNSNHPKNCLICDKCNQKFNKKRDLFSHIKNYHREGGYVCDVCPQSFTSLNILRKHRTNRHLTRCSICFLKLPSAVLKQKHMEIEHPDDGSLQCDICYKDFHTKQGLKMHSRKCKGDIFDITIKKEEYEAMDLDNGYEGVKRPSVKQIRENIVTVINMSTAVPFNFYKNKFNCFYCSQDFSDSDSMREHTLVEHPVCNVKEKCIRKCRESVACVKIDISSLSCKICFETMNDLDPLLDHLVIKHQANYDKSITTCLQPYKLIKDHMVCPNCPNEVFRFFGTLLKHMNNEHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCSICNADCNIPSRLYMHMAKAHGVKAAKCPKCPESFATQYLRQKHLIEAHDSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSICGMKFFNNILLRRHMVKHSGEKNFHCDMCGERFYWRKSLRTHMAKHNKQA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00621427;
- 90% Identity
- iTF_01021549;
- 80% Identity
- -