Ehyp005407.1
Basic Information
- Insect
- Elymnias hypermnestra
- Gene Symbol
- -
- Assembly
- GCA_015832385.1
- Location
- JACTOM010000055.1:915005-921215[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00013 0.01 16.9 2.6 2 21 130 149 129 150 0.95 2 17 0.49 40 5.6 0.2 3 23 156 176 155 176 0.94 3 17 0.00023 0.019 16.1 0.8 1 23 181 203 181 203 0.98 4 17 0.00032 0.026 15.6 1.0 2 23 209 230 209 230 0.96 5 17 0.38 31 6.0 4.7 1 20 233 252 233 254 0.93 6 17 1.7e-05 0.0013 19.7 1.0 1 23 268 291 268 291 0.95 7 17 0.012 0.95 10.7 4.0 1 23 297 319 297 319 0.96 8 17 3.6 2.9e+02 2.9 0.3 1 23 353 376 353 376 0.74 9 17 0.00026 0.021 15.9 1.3 2 21 512 531 511 532 0.94 10 17 0.029 2.3 9.5 1.1 1 23 565 588 565 588 0.97 11 17 9.7e-05 0.0078 17.3 1.2 2 23 594 615 593 615 0.96 12 17 1.8 1.5e+02 3.8 2.7 2 21 619 638 619 639 0.91 13 17 1.5e-05 0.0012 19.8 1.4 1 23 665 688 665 688 0.95 14 17 0.00032 0.026 15.6 0.5 1 23 694 716 694 716 0.95 15 17 0.072 5.8 8.2 0.1 1 23 722 744 722 744 0.97 16 17 0.0033 0.27 12.5 0.7 1 23 750 773 750 773 0.94 17 17 0.00016 0.013 16.6 5.7 1 23 779 802 779 802 0.96
Sequence Information
- Coding Sequence
- ATGGTATTTTACGAAATGACCTTGAACCTTATAGATCAAGGTCATTTCATTGGAAAGGTGTGGGAGGAAACCGACCTGCCTGGAGCCCTTTGCAGCGGCTGTACCAACAGCGCCTTACTGGCATGGAAGTTTATATTGCTAAGCCGCGATTCAGACCGTGAATGGACCCGGGTATCTTTGCTATTGAAAAATATCGAAGACCCAAAGCCAGAagacaaaatcttttatatatgttgtGACAAAGACGGCAAAATATACAGAGATAATGTATCCAAAATACACAGCTTAGAAGAAGCTGCTGGAAGACTAAATTTAGCTGCTAGCACTAAACAGAGGCAAACTCGCAAAACAACCAAAAAAAAGCACCCAAAAGTAAACCTTGAAACGAAATGCCATCTTTGCGGAAAGCATTTCAGTTTGCCCTATTACctgaataaacatttaaaaaacacgACAAACAGAGCTTGTAATTTATGCGGGTATATCCTCCCAAGGGAAAAATTACAGAAGCATTTACAAAGCGAGCattttaagtttgtttacaACTGCGATATATGCTATAAGCTGTTTGACGACAGTTCAAGTTACAAGGCTCATAGACAGATCCATGGCATGGACTACCCACAATGCAGGATATGCAAAAAAGGCTTTAAAAACGACAGATCCTTACGTGCCCATATGTATGCCCACACATTATTCAGCTGCTCATCTTGTAACACTAGTTTCGAGAACAGGAAATGCTTCACCTATCACAGAGAACGGTGTACAGACACAAAGCAAATCAACGAAGGAGACGAGGATTACGAATGCAATTATTGCGGTAGGAAATATACAAAGAAGCCATCCCTTAGAATTCATATTATACAAAAGCATTTGAATGTTTTGCCCTTCGTTTGTCAGATTTGTGGGAAGCGTAGCTCAACTAAAAGCCACCATAAATCCCACGAGCTCATCCATAAAGCGGAAAGAAAGGTTTACCAATGTTATTGCGGTGCCAAAATGCGGACATCTCTCGGCTTTCATATGCACCAAAGGATACATTCGGGTGTAAAACCTTACGAGTGTGAGGAGTGTGGGGATAGATTCCTATCTGCTTCTAGAAGATTGGATCACGTGAAGAGAAGACACAGAGCTGGGGAAATGCCCCACAAATGTGATCAGCATCAACTTAAAAGGAAAGATAGAAATGACATATTCATAAAGCTGACATTAACGAGACAAGATGAGCAACTATTTCCCCAATTTCTCTGCGTATCCTGCACTCACGTAGCGACAACGGCTTACGAATTTCGATTGTTTGCAAGGAACTCACTAAAACTCTGGTCCAACTGCATAACTTCCATCGAGAACCTGTGCCCTCTTAAATCGCACAGGTCCTTTTACACTATAATAAAAGAGAATCTATTACTCCAGAGTGTCAATAACTTCGATGGCAGCGCAAAAGACTTGGCACACCACCTTTCGAATCGTTTCAAGAGGAAACCTATTATAATGGAGAGGAAACCACGACATCCTCGTACAGGACCTGCCTGCAAATGCACAGATTGCGGGAAAACCTTCCTTAGTCCATATTACCTGAACATTCATCTGAGGAATAGCGGACAGAAGGAAGCCTGCTGGTTATGTGGTACAATGTTGATACGAGGATTGGAGATGAGGGAGCACTTGATGGATCTTCACAATACAGATATGTTCATTTGTGCTGAATGTCCACTGCTCTTCAAAAGTGAATCGGACAGGAAGATCCATGTCAGGAAATGTCATGGTCCCGGAAAATTGACTTGCTCAGACTGCGGAAGGACTTTCATAAGACATGCATCCTTTGAGGTCCATTCTCAGATGCACGCTGTAAGGACTTGCAGAGCCTGTGGTTCCCAATTCACCAATAGAAGCTGTTATAGAGAGCACAGGTCGAAATGCGAACCTGATGCAAAACCGGATCTAAGGACTGTGCCAAGGAGTCGTCGATCAAATATCCGGGATCCGGCTACCTTTACCTGTGACTATTGCGGGAAGACCTACCATTCTAGGCCTCAGTTGAAAAATCATATACTGTGGATCCATATGGATATCAGACCACACCAGTGCCAATGGTGTGGAAAAAGGTTCTATACTCCAGCTAGATTGGCTGAGCATACAGTCGTCCATACACGGGTCAGAAACTTCGAGTGTGACATTTGTGGAGCAAAACTGGTCTCCAAAATGGCCGCTGTCTACCATAGACGGAGGCATACTGGTGAAAAGCCCTACGAGTGTCAGGATTGTGGGGAAAGGTTCATATCCTCCTCCAGGAGGTCTGAACATGCGAAGCGGAGGCACAACAGAGGCTCACGTTTCCAATGCCCCCATTGCCACTCCAGCTTCGTGAGGAGTCACGAGCTGAAAAAGCATGTGGACAAAGTACACAATACTGAAAGTCAAATGCTGGTGAAATTGAAGGGTGACGATTTTCTGGCGATACAAAGCTGa
- Protein Sequence
- MVFYEMTLNLIDQGHFIGKVWEETDLPGALCSGCTNSALLAWKFILLSRDSDREWTRVSLLLKNIEDPKPEDKIFYICCDKDGKIYRDNVSKIHSLEEAAGRLNLAASTKQRQTRKTTKKKHPKVNLETKCHLCGKHFSLPYYLNKHLKNTTNRACNLCGYILPREKLQKHLQSEHFKFVYNCDICYKLFDDSSSYKAHRQIHGMDYPQCRICKKGFKNDRSLRAHMYAHTLFSCSSCNTSFENRKCFTYHRERCTDTKQINEGDEDYECNYCGRKYTKKPSLRIHIIQKHLNVLPFVCQICGKRSSTKSHHKSHELIHKAERKVYQCYCGAKMRTSLGFHMHQRIHSGVKPYECEECGDRFLSASRRLDHVKRRHRAGEMPHKCDQHQLKRKDRNDIFIKLTLTRQDEQLFPQFLCVSCTHVATTAYEFRLFARNSLKLWSNCITSIENLCPLKSHRSFYTIIKENLLLQSVNNFDGSAKDLAHHLSNRFKRKPIIMERKPRHPRTGPACKCTDCGKTFLSPYYLNIHLRNSGQKEACWLCGTMLIRGLEMREHLMDLHNTDMFICAECPLLFKSESDRKIHVRKCHGPGKLTCSDCGRTFIRHASFEVHSQMHAVRTCRACGSQFTNRSCYREHRSKCEPDAKPDLRTVPRSRRSNIRDPATFTCDYCGKTYHSRPQLKNHILWIHMDIRPHQCQWCGKRFYTPARLAEHTVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGEKPYECQDCGERFISSSRRSEHAKRRHNRGSRFQCPHCHSSFVRSHELKKHVDKVHNTESQMLVKLKGDDFLAIQS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -