Ehyp008825.1
Basic Information
- Insect
- Elymnias hypermnestra
- Gene Symbol
- -
- Assembly
- GCA_015832385.1
- Location
- JACTOM010000103.1:1275872-1277152[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0087 0.71 11.1 5.1 1 23 121 143 121 143 0.98 2 11 4.5e-06 0.00036 21.5 1.8 1 23 149 171 149 171 0.98 3 11 4.8e-05 0.0039 18.2 2.2 1 23 177 199 177 199 0.97 4 11 0.00012 0.0097 17.0 2.9 1 23 205 227 205 227 0.98 5 11 0.00037 0.03 15.5 2.1 1 23 233 255 233 255 0.98 6 11 0.0052 0.42 11.8 9.7 1 23 261 283 261 283 0.99 7 11 3.3e-05 0.0027 18.7 0.6 1 23 289 311 289 311 0.97 8 11 6e-06 0.00048 21.1 3.4 1 23 317 339 317 339 0.98 9 11 7.2e-06 0.00058 20.8 2.0 1 23 345 367 345 367 0.98 10 11 2e-05 0.0016 19.5 4.7 1 23 373 395 373 395 0.98 11 11 0.00045 0.036 15.2 1.0 1 23 401 423 401 423 0.98
Sequence Information
- Coding Sequence
- ATGCCGACTGGACTGAAACTAAGTAACGAAAAAGAATTGAAGAAAAATGAAGATTTCGGCACAAATAACATTAAACAAGAATTTACAGATGATAAAGCGGTAAACCACGAAACATTAAATATGGATAAGAAAAGAAATCATCGTTTAAAAACGGCTAAGGGTATTGGGGATCCAGATACAAGTAATAACCCAGTAGAATGGGAAGTCTCAGTAACTGATgtcgttttatataaaacacaggtCGATAAGACGAGAGTAGCAAATGAaagtattttcttaaataacgattttaatacagtaaatAAACAACAACCAGATAGTTCTCAACAACCCGGTCCCTCGAATAAGCAAATTTCAGAGTATTTTTGTGAACACTGCGCATATAAAAGCAATAAACGAAAAAATCTGCTAAAGCATTTGAAAACCCACTCTACTAACAAACCTTACTCTTGTAAGTCATGCGATTATGCATGCATACGAAAGAGTGATTTAACAGCACACATGAAGATTCACAAAGGTGGCAAACTTTTCACTTGTGAACTATGTGATTATACAAGCAAACGTAAAAGCAATTTCGTAAGTCATATGACAAATCACACCGGCGAGAAACCATTCTCATGtcaattatgcgagtatgcatgcagagatAACCACGATTTAGTAACACACATGAGAATACACACCGGCGAGAAGCCTTTTTCATGCGAATTATGCGAGTATACAACAGGACATAAAAGTAATTTAGTCACTCACAAGAGAGTTCACACTGGCGAAAAACCTTATACGTGTAAATTTTGCGATTATTCATGCAGACATAAATGTAGTTTAATAAGTCATAcaagaattcacaccggtgagaAACCCTTCGCTTGTAAATTATGCGACTTTGCAAGCAGCCGAAGAAGTGATTTAGTGACTCACATGAAAAGTCACAACGGCGAGATGCCGTTCTCGTGCAAATTATGCGAATATTCATGCAGAGATAGATACGATTTAGAGAAACACATGAGAATACACACCGGTGAGAAACCGTTCTCGTGCGAGTTATGCGAGTACTCGAGCACGCATAAAAGTAATTTAGTAAGTCACATGAGAATACATACAGGGGAGAAACCTTACTCTTGTAAATTGTGCGGATATTCATGCAGACATACAAGCACTTTAGCAAGTCATATGCGTATTCATACCGGTGAGAAACCTTATTCATGCGAATTATGCCAGTATTCGAGCAGATATAAAATTGGTTTAGTGCGTCACATGAAAAATCACAattgtgtttaa
- Protein Sequence
- MPTGLKLSNEKELKKNEDFGTNNIKQEFTDDKAVNHETLNMDKKRNHRLKTAKGIGDPDTSNNPVEWEVSVTDVVLYKTQVDKTRVANESIFLNNDFNTVNKQQPDSSQQPGPSNKQISEYFCEHCAYKSNKRKNLLKHLKTHSTNKPYSCKSCDYACIRKSDLTAHMKIHKGGKLFTCELCDYTSKRKSNFVSHMTNHTGEKPFSCQLCEYACRDNHDLVTHMRIHTGEKPFSCELCEYTTGHKSNLVTHKRVHTGEKPYTCKFCDYSCRHKCSLISHTRIHTGEKPFACKLCDFASSRRSDLVTHMKSHNGEMPFSCKLCEYSCRDRYDLEKHMRIHTGEKPFSCELCEYSSTHKSNLVSHMRIHTGEKPYSCKLCGYSCRHTSTLASHMRIHTGEKPYSCELCQYSSRYKIGLVRHMKNHNCV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -