Ehyp017146.2
Basic Information
- Insect
- Elymnias hypermnestra
- Gene Symbol
- -
- Assembly
- GCA_015832385.1
- Location
- JACTOM010000880.1:1290802-1305463[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.23 19 6.6 0.8 2 21 221 240 220 241 0.93 2 12 0.00065 0.052 14.7 1.9 1 23 251 273 251 273 0.93 3 12 0.00012 0.0094 17.0 6.0 2 23 280 301 279 301 0.97 4 12 7.4e-05 0.006 17.6 0.7 2 23 308 329 307 329 0.97 5 12 7.7e-05 0.0062 17.6 3.6 1 23 338 360 338 360 0.96 6 12 8e-05 0.0064 17.5 0.7 2 23 367 388 366 388 0.94 7 12 0.00018 0.015 16.4 4.4 1 23 394 416 394 416 0.98 8 12 3.3e-09 2.6e-07 31.3 1.1 1 23 422 444 422 444 0.99 9 12 3.3e-05 0.0027 18.7 0.5 3 23 463 483 461 483 0.97 10 12 9.9e-06 0.0008 20.4 0.3 1 23 489 510 489 510 0.98 11 12 0.034 2.7 9.3 2.1 1 23 516 538 516 538 0.89 12 12 0.0015 0.12 13.6 3.2 1 23 544 566 544 566 0.98
Sequence Information
- Coding Sequence
- ATGTCCAGCAAGAGtaggttaaataataaagtaacaaTTGATCTAGAATGTGAAATACCAGTTGCAAAGATAGTCAATAGAAAACAAAGTGTAGACTTAAACACAACtagtgttattaaatataataaagaatgtaCTAATAAAAGTTTGAAAACCAAACGAAGTAGTACGAGAAGCAAATTAAGATATCAAGATGTATGTCGTATTTGTTTGAACGCTGATGAAAACATGATCTCATTGATGTCCAACATTGGAAATGATTTGGTGgctgatatattttattgtattacatcTGTTGAAgtaGCTCAAGATGGAAAACTTCCACTGACAATATGTGATTCATGTCAACACAATCTTATGTATTGCTACAGGTTTAGAGTTAAATGTATTGAATCTAACAATATTTTAGCATCAAAATTATGTTCTGAAAATGGCTGGTGTAAACAGGTGTCTAATTCCATGAACAAAATAGATAAGGAGACACAAACATGTGTCGAAGATGAAATAGTGATAAAGTTAATAGAAGAAAATGCCAAATGtgaaaatagtaatataaaaactgaaTATGATGTTAAAATGGAGAATCTTCTGGACGATGAATCTCAGGAGCTTATGAAAGAAAGAGATGAGAAGtacattaagaaaaataaactcAATTTATCTTGTTCTGGGTGTTCACGGAAATTCCTTAAGTCGGCGTCATTTAAAAAACACGTGAAACTTTGTTGCGCTAAAAAATCAAAGAGCGAATTTAGTTGTAGCCAATGCAAGGAGTCTTTCAGTACGCACAATGACCTACAGATACACTCTGCACTGCATACTAAAGGGAATATGTGGAAATGCAACCAATGCCATAAAGAATTTAAAGATCGTACTAGATTCCGTCGCCACATACGACGCCACATGGAGTCGAAGCGCTGGACGTGTGACAGCTGTGGCAAAACATTTCCGGAACTGTGCGCGCTGCGTCGCCACGTCCGAGTGCACACTGGCGAACGACTCGAAAAGAAGTATCAATGCAAAGTTTGCGACAAGAAGTTCTGTGATAAGAATCAGCTGTCGGAGCACAGTGCTAGGCATACAGGTGTGAGGCCGTGTACTTGCGATGTATGCGGCAAGACCTTTCCCTCGTCGCGGCTGCTGGCCTCACACAGTCTCGTGCACTCCGACCAGAGGCCTTACGCTTGTGCTTTCTGTGATAAACGaTTTCGCCAAAAATCGTCACGTAACATCCATCATCGGACACATACTGGTGAGAAACCGTACGTGTGTTCTACTTGTGGGAAGTCTTTCATTCAAAATTCCAATCTGAGGCTTCATATGCGCACGCATACAGGCGAAAGGCCGTATGGCTGTGACGTTTGTGGTCGCGAAAGGCCGTATGGCTGTGACGTTTGTGGTCGTAAGTTCAGTTCCGGGTCATCACTAACCAGTCACAAACGCATCCACACGGGAGAGAAACCATACAGCTGTCCTGTTTGCGGAAAAAGATTTGCGAGAACAGATTTGCGATCGCATATGCGTATACATACTGGTGAAAGACCTTATGCTTGTTGCGTGTGCCCAAAGAAGTTCGTCAACGCCGCGAGGTTAAGGGACCACTGCCTCATACACACTGGAGAAAAACCTTTTCAATGCGCCCTATGTACTgagagatttaaaaagaaactccACTTACTAAAACACCTAGAAAGCCACAATAacgataaaaaagttaaaaacgaCATGATCATAGTGAGACAAATCCCATCGACTGTAAATGACATAGTTTATAACAAAGACAAATCAACATACAATACAGAAACTGTATTTCAAAGTAATGACAATAGTAAAAATTTAACTTTAGTCACTGACGACATACCATTGGAAGTATCAGAGGAACTAATACTACAAGACGATGACGATGTTAAAACAGAACTTGTAGTAGTTGATGACGGTCAAAGTAATGTAAACTATCAAAACAATGATAACGTGTGTCTAAAAGAAGTCAATTATGTAATTAATGATGTCAATATCAATGACGTTGATGTCATGGCGGTGGATGAGGGTGAAATCAATCTATCATCATCGGTACTTGAAGGGACAACAGTAAAATTGTATCAATTGGACGAGAGTTTACTGCAAATACAGACATCAGGGAGACAAGTGACTATAAGGAAGATAACTAGCAAAATGACTGCGAACTTTTAG
- Protein Sequence
- MSSKSRLNNKVTIDLECEIPVAKIVNRKQSVDLNTTSVIKYNKECTNKSLKTKRSSTRSKLRYQDVCRICLNADENMISLMSNIGNDLVADIFYCITSVEVAQDGKLPLTICDSCQHNLMYCYRFRVKCIESNNILASKLCSENGWCKQVSNSMNKIDKETQTCVEDEIVIKLIEENAKCENSNIKTEYDVKMENLLDDESQELMKERDEKYIKKNKLNLSCSGCSRKFLKSASFKKHVKLCCAKKSKSEFSCSQCKESFSTHNDLQIHSALHTKGNMWKCNQCHKEFKDRTRFRRHIRRHMESKRWTCDSCGKTFPELCALRRHVRVHTGERLEKKYQCKVCDKKFCDKNQLSEHSARHTGVRPCTCDVCGKTFPSSRLLASHSLVHSDQRPYACAFCDKRFRQKSSRNIHHRTHTGEKPYVCSTCGKSFIQNSNLRLHMRTHTGERPYGCDVCGRERPYGCDVCGRKFSSGSSLTSHKRIHTGEKPYSCPVCGKRFARTDLRSHMRIHTGERPYACCVCPKKFVNAARLRDHCLIHTGEKPFQCALCTERFKKKLHLLKHLESHNNDKKVKNDMIIVRQIPSTVNDIVYNKDKSTYNTETVFQSNDNSKNLTLVTDDIPLEVSEELILQDDDDVKTELVVVDDGQSNVNYQNNDNVCLKEVNYVINDVNINDVDVMAVDEGEINLSSSVLEGTTVKLYQLDESLLQIQTSGRQVTIRKITSKMTANF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -