Ehyp011881.1
Basic Information
- Insect
- Elymnias hypermnestra
- Gene Symbol
- -
- Assembly
- GCA_015832385.1
- Location
- JACTOM010000251.1:111701-114070[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.4e-06 0.00035 21.5 3.9 1 23 6 29 6 29 0.95 2 20 0.0013 0.11 13.7 0.1 2 23 35 57 34 57 0.96 3 20 6.8e-06 0.00055 20.9 0.3 2 23 66 88 66 88 0.97 4 20 9e-06 0.00073 20.5 3.4 2 23 97 119 96 119 0.95 5 20 0.00018 0.015 16.4 2.0 2 23 127 149 127 149 0.96 6 20 1e-06 8.1e-05 23.5 0.7 2 23 157 179 156 179 0.96 7 20 5.4e-07 4.3e-05 24.4 1.1 1 23 185 208 185 208 0.98 8 20 0.00022 0.018 16.1 2.6 1 23 258 281 258 281 0.98 9 20 0.043 3.5 8.9 0.1 1 23 314 337 314 337 0.96 10 20 0.039 3.1 9.1 0.9 3 21 346 364 344 365 0.93 11 20 0.16 13 7.2 2.8 2 23 374 396 373 396 0.93 12 20 0.091 7.4 7.9 6.5 1 23 419 442 419 442 0.96 13 20 1.1e-05 0.00092 20.2 1.1 3 23 450 471 449 471 0.97 14 20 5.3e-05 0.0043 18.1 2.2 2 23 478 500 477 500 0.94 15 20 0.012 0.96 10.7 1.5 1 23 506 529 506 529 0.97 16 20 0.24 19 6.6 4.8 2 23 537 559 537 559 0.95 17 20 0.00098 0.079 14.1 0.2 1 23 566 589 566 589 0.96 18 20 0.00078 0.063 14.4 1.2 1 23 596 619 596 619 0.92 19 20 0.018 1.4 10.1 2.7 3 23 632 653 631 653 0.91 20 20 3.5 2.8e+02 2.9 0.3 3 14 675 686 673 689 0.85
Sequence Information
- Coding Sequence
- ATGTCTCAACCTGATTATATTTGCGACTACTGCAGCCGTTCTTTTACAAGGAAGTACAATTTGCAAACGCACATAGAAAATTGTCACTTGAACTCAACTAGTTCCTGTGACATATGCAACCAAACATTTGGGAGCCCCGCCGGCCTTTATTTACACTTGAACAGGGGCCACAATAGGTTTGGCCAAGGTTTTCCTGAATGTGACTTATGTGGCAGAGTCTTCACCAGAAAACAGAACATCACCTCGCATATGATAACGGTACATTTACAAAGTGGTAAATCGATAATTTCTTGCAATTTGTGCCATAAGACTTTCACAACTGAGCGTAATTTGAAACGGCACCTCAACCAACTTCACAACCCTAACATCCAGTATCCAACATGTGATGAATGTAACAAAATTTTCAAAGGGAAACATTCACTTCTATCGCATATACAATCGAATCACTGTACTGCAAAAGTAGAGATAAAATGTGATGTCTGTAATAAAGTTTACACGAATAACCGAAATCTAAAACGGCACATTGAAATGCAGCATGGACAGAAAGGAGAGTTTAAATGTGACATTTGTCCTAAAGTATACTCTTCAAATCAGAGTCTACGACGTCACACTCGGTCTTTACATACAATTGATAGTACCAACCAGTTCAGTTGTCAATATtgtcttaaaattatacttGGAAAGGAAAATCTGGATAGCCATGTATCCTTTTATCACAGACAAGATCTCAACCAGTGCGAATATGGTGCCCTAGATTCCAGCAAATATGAATATTCGTGTGAAATATGCAATATGCATTACAGAAAAGAATACCAATTGAGACAACACGTGAAAACCGTGCACAGCTTCCAAGAGTTCTACGAGTACTGCAGAAAGTCTTTGACGAGATTATCCCAGAAAGCATACATTGATTCAAAAACTAAGAGGAGAAAGCTCTCTTACGCCTGTGAATACTGTGCTGATGGATTCGCAATGGTCTACGAGCTAAAGGATCACATGAGATCCATGCATGATAAGGAATATTGTCTGTCAATTTGCAACGTCTGCTTTAGAAAGTTTTATACCAAAGAAACTATCTTGCGACATAGGAAAAGCTGTGTACCCCCAGTGGACGTGAATAAGTGCAGACATTGTGACAAACTTTTTACGGACGTCTCGAGTCTTGATTTTCATACCAGAATTTTTCATCCACAATCTCAAATTTTCAGTGCTAGTAATTCTTGCATCGTAGATGACACAGTCGAGAAAATTTCTTATAAATGCTTGCACTgtgaaagaatatattttagtgAGAGATCACTCAAACACCACACAAAATTGAAGCACACAAAAGAAGACGCTGTGGCGTGTCAGCAATGTGGAAAAACATGCAGCAACAAGTATTACTTGGCTTCTCATATTAGAATCGTTCACAACAACGATACTCTATCTAAATGTGAATATTGTGATAAATACTTTAAATCGAAACGCAATATTCGCAGGCACATCGAATACACGCATCAAGGGATGCAAAGATATAAATGTATCGAATGTGAAACTCTTTTCAAAGAAAAGAGGAGTTTGCGAAAACACGTAAGAGTGAAACATCCAAATTCGACCGCATTTCCACAATGCCATATCTGTTATAAACGTTTTGAATCTGCTAAATCTTGTAAAATACATCTGAAGCTGTTACACTCCTTCAACATGAATACACATCCGTGTGATTTGTGTTCTGTGTCTTTCGATACATTGGAagctttaaatatacatatatctacaaaaCATTTAGCGAAGGACCAAATTTATAAATGCCAAGAATGCAATTTGGTATTTAAAGGGCAAGAAAAGTTTGAACGCCACAAGGAAGCGTTTCACAGTCAGCCGTCGCTCGAGGAAAAGTTGATACCGCGTTGTATTATATGTATGAAAGACTTCAGTACTCGTAAAACTTTGAAGCGGCACATCAAGAAATTTCATAACGAATTCAACGTGGATGAACTGGCGACATACGGCACGAGGAAGCGCGTTTTCAACATCGACTGTAATGATTGCTTAAAGAATTTTAACGACGCATTCTACTTCGATGCTTACCTCAAATTGAAACATTTGAGGGACTCTGTTGTATTCAATTGCGAAACATGCCAAGGTTCATACAACTGCTTGGAGTTTGCTATACAAAGATATAAGCAAAGTTTTGATATGTCCCAAACCAAGCTCTACTTGAGCGAGTTGTGTACAGCTGAGATGAGCGATGATTCTAAATACGGTTCTTCCCATAATgagacaattgaaaaaaaaaccaacgGCGATTTGAAACCTGAGACGAGCGATGAGTTTGTCCCTGTTGTTTGTGATGTTGTCAGTATTAAATTGGAGCCTGTGGaataa
- Protein Sequence
- MSQPDYICDYCSRSFTRKYNLQTHIENCHLNSTSSCDICNQTFGSPAGLYLHLNRGHNRFGQGFPECDLCGRVFTRKQNITSHMITVHLQSGKSIISCNLCHKTFTTERNLKRHLNQLHNPNIQYPTCDECNKIFKGKHSLLSHIQSNHCTAKVEIKCDVCNKVYTNNRNLKRHIEMQHGQKGEFKCDICPKVYSSNQSLRRHTRSLHTIDSTNQFSCQYCLKIILGKENLDSHVSFYHRQDLNQCEYGALDSSKYEYSCEICNMHYRKEYQLRQHVKTVHSFQEFYEYCRKSLTRLSQKAYIDSKTKRRKLSYACEYCADGFAMVYELKDHMRSMHDKEYCLSICNVCFRKFYTKETILRHRKSCVPPVDVNKCRHCDKLFTDVSSLDFHTRIFHPQSQIFSASNSCIVDDTVEKISYKCLHCERIYFSERSLKHHTKLKHTKEDAVACQQCGKTCSNKYYLASHIRIVHNNDTLSKCEYCDKYFKSKRNIRRHIEYTHQGMQRYKCIECETLFKEKRSLRKHVRVKHPNSTAFPQCHICYKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFDTLEALNIHISTKHLAKDQIYKCQECNLVFKGQEKFERHKEAFHSQPSLEEKLIPRCIICMKDFSTRKTLKRHIKKFHNEFNVDELATYGTRKRVFNIDCNDCLKNFNDAFYFDAYLKLKHLRDSVVFNCETCQGSYNCLEFAIQRYKQSFDMSQTKLYLSELCTAEMSDDSKYGSSHNETIEKKTNGDLKPETSDEFVPVVCDVVSIKLEPVE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -