Basic Information

Insect
Elmis aenea
Gene Symbol
prdm10
Assembly
GCA_947652605.1
Location
OX393579.1:33275432-33304190[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00023 0.03 15.7 0.2 2 23 480 501 479 501 0.96
2 11 2.4 3.2e+02 3.0 1.6 2 15 534 547 533 557 0.76
3 11 2e-05 0.0026 19.0 0.3 1 23 640 662 640 662 0.99
4 11 0.049 6.4 8.3 2.9 2 23 671 692 670 692 0.97
5 11 0.0084 1.1 10.8 0.4 1 20 699 718 699 721 0.92
6 11 0.00044 0.058 14.8 1.5 1 23 727 750 727 750 0.95
7 11 0.00031 0.041 15.3 2.0 1 23 755 777 755 777 0.97
8 11 1.3e-05 0.0017 19.6 2.0 1 23 783 806 783 806 0.94
9 11 0.013 1.8 10.1 1.1 1 23 842 865 842 865 0.97
10 11 6.5e-05 0.0085 17.4 2.3 1 23 887 910 887 910 0.97
11 11 0.0017 0.22 13.0 2.6 3 23 950 971 949 971 0.97

Sequence Information

Coding Sequence
ATGGAAAGCAGTATTATGTCGTGTAGAATGGATAATGTTGAAAATACTTCGGATACTGGAGGCACAATGGGCATTAATAATTTTACATCAAATACATCTTGGAATAACTCTCAAAATGTTACGAACTCCAATCCCAATTCAACTCTTTTGTTTATTGAGGTGGAATACGTGAAAGATTGCGAATATAAATTCGAAGCAGATTCAAATTATTCCCCTCAGCCAACACCGTGTACAGATTTTGGACAGCATGTGAGCCCTCTGGATCCCAATATGAGTTCGGTGGCACGTTATAGTCCCAGTAGCCCTTCATATACAGATACGTCTACGTCATATGGTAATCCCGTTGTAGTACATCAGATGATTTCGGCAGATTCTGCACAACGCTTGGTTGATTCATCTGATGCATATGTGAATAATTTGTCGGAGGCACAGTCTCATTTAGAAACTATACCTGCAACTCTAAACACATGTGAAAATAGTCTATTGAAGCAAGTTATGAACAGTAGATTTATGGAGCAAGGATCTCCTGTTACATCGACGTCTCATGGTGAAACTGTACAGTTAATTCCGGAAACAGAACATGAAGTAGAATTGTTAATTACAGATCAAGTTACAGGTATTTCATATAGTGTGACCAGCACACAAGAATTTTTGGTGGAGCGTTGTTTAGCAGATGAACAACATTTATTAGATGCATTAGCTCCAGGACCTTTGCTAGATTCTGATCTCCTTGCATTAGACGATTCAACATTAAAATCGCAGTTGCCAGATATAGTTGATTCTATCAATGGAACATCGTCCCTGTCTTTAGATGCTCGTTCTACTGATATAGTCACTCCCATATCTCAGCTTTCAGCGAAAGATGATAAAGCAGATCATAATATACAGTGTGAGCAAAAAGAGGATAATAAAAGAACTTTACGACAAACTGACATTGCATTGACGGAATCTGAAGAACAGTTATTATCTGGTGTGCATTGTATAAGTGATAAACCAGTACCATCTCGTGCAAAGGCTACACTTCCAGCTTCATATTTGATGATTAATAAGCTTAATGACGAGGAATATGGCGTGTTTGCTCGAAAATTGATTCCTAAAAGAACCCAATTTGGACCTCTTGAAGGTTCGTTGGTGTCGGAAGAAACATTAAAAGTGGAACACAATCAACTAAACCTTCTAATTGAAACTGAAAGAGGATATGTTTACAGATTAGATGTTAGCGATGAAAATAACTCCAATTGGATGTGTTTTGTGAGAAAAGCATCAGACTTAAGTGAGCAGAATTTGGTTCTTAGTCAACAGGGAACATCGCTGTATTACACAACCACTAAAGCGATTGCTCCAAAACAAGAATTATTGGTTGGATATAGCACACCATATGCAGAGAAACATAACCTACAACTTGTTGAAAATTCTTCTGATGCTAAATATGAGTGGCCATGTTACGAATGCAATATGAGCTATGTATCTTCGGATAAACTTCAAAAACATTTAAATTTGCACGATAGTGATGACAAGCAGAGTAAAGCAAAGCTTCGAAAAAAATCTTTTAAGACCAAACGGAAGGTGATAAAGAAACTGGAGAAACTCGATATGTTAATGTGCAATATCTGCAAGACTAATTTTCCCCAACCGAAATACAATATTTTAAAGAAACATCTTTTGCAACACAACTTCAGTGCAAATACTTCTGTCAACGACAAATTTACTATTGTTAAAACGGAAGAAAAATCTTGCGAATCCTCTGCTGATCCAAAGGCTTCTTTAAAAATGCGAGATTTGCATTCTTCTAAAGATAATCTCGAAGAGCAGACAACTCTGGTGTGTTCGATTTGTCAACATAAATGTTTAGGTTGTAAAGAACTAATGGAACATATGACTGTTCATGCCTCTGAAAATGACTTGTCACAAAAGGGCTACAAATGTCCAGTCTGCTATAAAGTTTTTGCATCTCGTGAACGAATACAGCGCCATATGCTTGTCCATGGTTCAGAAGAATCGAAACCTCTGAAGTGCGACACCTGTAACAAAAGATTTTTAAACAATTCCGCTCTGGCTTGTCATTTAAAAACACACAGCATCGGAAAAAAGGTATTCGAGTGTCCTATATGCAGAGAAAGCTTCGATCATGTTTTGCAACTTAAAGTTCATGTTCCAAAACATTGTCACGATGGCAAATATACATGTCCCCACTGTGGTAAAATTTTCAAGGAATATAGCATCATCCGTAAGCATATTAGGGCTTTCCATTGTGAAAGGAAACATAACTGCCCTCATTGTGCTAAACCATTTCCTACGTTGGACAAGCTACGGATGCATCTTCTTCGACACTCTGATCATCGTGAATTTCTATGTGCAGATTGTGGCAAACAATTTAAACGCAAAGATAAATTGAAGGAGCACACAAAACGTATGCATTCAGAAGAAAGGGAAAATACAGTTCCCAGACCTATGAAAGTCGCTGCTCAAGCCAGTAAAAAGTTTACACCCAAGGTACAGCCCACTGATTATCATCGATTTATCTACAAGTGCCATGCTTGTTTGGTTGGATTTAAAAGAAGAGGAATGCTGGTTAATCACTTAGCAAAGCGACATCCGGATATTAGTCCCGATTCTGTACCTGAACTAAATTTACCAATACTACGTACTACTCGTGATTATTATTGTCAATATTGTGATAAAGTGTATAAAAGCAGTTCCAAACGTAAAGCCCATATTTTAAAAAATCATCCAGGACAGGCGTTGCCTATGAGTAATCGACGACAAGGTTCATTTTCTGAGGTGGCAGGATTGCCCAACCCCACATTCTCACAGACTGTAGGCAGTGTTACTACTCATCCACAGGCTTGCCAATGGTGCCACAAACAATATGCTAGCAAGGCCAAGCTGCTACAGCATCAGAGGAAAAAACATACAGATCTTTTACAAACCTTATCGTGCAGTTCAGCTAAATCACCCAACGAACAAAACCAGATTCAGAATCAAGTTGAGGAAATTAATATTGATGCGCATTTATTTAAAAGGGATTTTAAGGTATCGGAAGAAGAGTTGTTGTCCGAAGTTGTTGCGCTAGGTGGAGATAGAGAAGATGGGCAGTATTACCAAATCATTCCTATGTCGGCTAGTGAACCAACAGCATACACTACCACACAAATTACCGACCTTAACCGCAGTGCTGATTCTCGTTTGTATCGTTTGTTGACTACAAGTAATGGTATGTGA
Protein Sequence
MESSIMSCRMDNVENTSDTGGTMGINNFTSNTSWNNSQNVTNSNPNSTLLFIEVEYVKDCEYKFEADSNYSPQPTPCTDFGQHVSPLDPNMSSVARYSPSSPSYTDTSTSYGNPVVVHQMISADSAQRLVDSSDAYVNNLSEAQSHLETIPATLNTCENSLLKQVMNSRFMEQGSPVTSTSHGETVQLIPETEHEVELLITDQVTGISYSVTSTQEFLVERCLADEQHLLDALAPGPLLDSDLLALDDSTLKSQLPDIVDSINGTSSLSLDARSTDIVTPISQLSAKDDKADHNIQCEQKEDNKRTLRQTDIALTESEEQLLSGVHCISDKPVPSRAKATLPASYLMINKLNDEEYGVFARKLIPKRTQFGPLEGSLVSEETLKVEHNQLNLLIETERGYVYRLDVSDENNSNWMCFVRKASDLSEQNLVLSQQGTSLYYTTTKAIAPKQELLVGYSTPYAEKHNLQLVENSSDAKYEWPCYECNMSYVSSDKLQKHLNLHDSDDKQSKAKLRKKSFKTKRKVIKKLEKLDMLMCNICKTNFPQPKYNILKKHLLQHNFSANTSVNDKFTIVKTEEKSCESSADPKASLKMRDLHSSKDNLEEQTTLVCSICQHKCLGCKELMEHMTVHASENDLSQKGYKCPVCYKVFASRERIQRHMLVHGSEESKPLKCDTCNKRFLNNSALACHLKTHSIGKKVFECPICRESFDHVLQLKVHVPKHCHDGKYTCPHCGKIFKEYSIIRKHIRAFHCERKHNCPHCAKPFPTLDKLRMHLLRHSDHREFLCADCGKQFKRKDKLKEHTKRMHSEERENTVPRPMKVAAQASKKFTPKVQPTDYHRFIYKCHACLVGFKRRGMLVNHLAKRHPDISPDSVPELNLPILRTTRDYYCQYCDKVYKSSSKRKAHILKNHPGQALPMSNRRQGSFSEVAGLPNPTFSQTVGSVTTHPQACQWCHKQYASKAKLLQHQRKKHTDLLQTLSCSSAKSPNEQNQIQNQVEEINIDAHLFKRDFKVSEEELLSEVVALGGDREDGQYYQIIPMSASEPTAYTTTQITDLNRSADSRLYRLLTTSNGM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-