Eaen018525.1
Basic Information
- Insect
- Elmis aenea
- Gene Symbol
- -
- Assembly
- GCA_947652605.1
- Location
- OX393582.1:30048391-30050926[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.17 22 6.6 0.9 3 21 8 27 6 28 0.85 2 15 0.2 26 6.4 0.1 2 20 34 52 33 54 0.92 3 15 3.8 5e+02 2.4 0.6 1 12 174 185 174 194 0.84 4 15 6.5 8.5e+02 1.7 4.2 1 19 328 346 328 346 0.97 5 15 0.0002 0.027 15.8 2.9 1 23 354 376 354 376 0.99 6 15 0.00033 0.044 15.2 0.5 1 23 394 416 394 416 0.98 7 15 0.22 28 6.3 1.2 1 14 446 459 446 467 0.79 8 15 2.9e-07 3.8e-05 24.8 0.6 1 23 473 495 473 495 0.98 9 15 0.0041 0.54 11.7 0.9 1 21 501 521 501 522 0.94 10 15 3e-05 0.0039 18.5 1.5 1 23 529 551 529 551 0.98 11 15 8.1e-07 0.00011 23.4 4.1 1 23 557 579 557 579 0.98 12 15 0.0013 0.17 13.3 7.6 1 23 585 607 585 607 0.98 13 15 2.3e-05 0.0031 18.8 0.2 1 23 613 635 613 635 0.98 14 15 1.3e-05 0.0017 19.6 0.2 1 23 639 661 639 661 0.98 15 15 0.0011 0.15 13.5 0.1 1 23 669 692 669 692 0.95
Sequence Information
- Coding Sequence
- ATGGGCACACTCCAATTAGAATGCCCATTATGTTGCAGTGAAACATTTCCTTCTCATTCATCCCTGAAATATCATTTATTAAGTATAATAGACAATTTAAATTGCCCTGCTTGTGGTTCAAAATTTAATAATATACATGACCTTGCTGAACACTTAGAAAACGATTGCCAAACTGAAGAACACCATAATACAGAACCAACCAGTCATAATTATTCAACAAAATTTAAATCCCCATCAGCGGGAAGTCTGGTAAAAAAAAATGTAAAACAAAATTCAATTTCTGGTGGTTCATCAGTAAATTCTACCTCTGCAGCTGTTACGATATTAGTTAAAGAAGAATGTGGGGACAGTGATCCAGCTGAAATAGATATAGACGAAAGCCAACTAGAATCATTTCTAGATAGTAGTACGTTAGCAAAAACTCTTATAAATAGCGAAGGCGATAGTACTGGGAAAGATCAGGAAGAGTACACTACGACAGAAGTAACTGCAGAAGATGAAACCAGTGATGAAGATCTGTATCATTGTTCGAGCTGTGATATTAATTTCACATCAGTTGAAGAACATTTACGGCAATATCATGAAGGACATCAAGTTTTTTTAGAGAATGTGGACTCGTGTGATGTGGATAAAGCTGAATTTGTTAAAGTTGATATGGACTATCACATGGATGAAAACGAAGAGGTTCCAACAATTGAACTAGACGATGATGATATTGAAGATAAACTAGACTCTTCCATAATCCCCACCAAACAAAAAAACCCGCAAGTTCTTAACACCGTAACACAACAAGAATGTTTTGATAAAGATGGTCGCTTATACACAAGAAAAGTAGTCAAGATTGAGAAGTTTTGGGACGAACAGCCTACCAGAGAAGATCCAATAACGCAAAAATATATATTAATAGGGAAGGGAAAGGCTGAAATTGCTACAGAAGAAAAACTTGCCAAGCTGAAAGATAAAAAAAAGCTGCTAGAAGTTCATCAGTGCTCAAAATGTTTAGTACAATTTGCTAAATTAGAGCATTACCATCGACACGATTGTGAAGGGAATCGCGATTTCAAGTGTGCACAGTGCGAATCATCGTTTTACAGTTCGAAATCGCTTTGCGCTCACATGAAAGTGCATAAAGAAACCCATAAACTTGTAAATTCTGACAACAACGACCCGTTAGGACCTTTTATCTGTGAGATCTGCAATACGGAATTTCCAGTGTTCAAATCGTTGCGGCTACACAGACGAATGCACGACCCAATTAAAGTAAAAGAAATCGAAGCCCCAGTAACATACGGCATGTTAGGGGAAATCACGTCGAACGAAGCCCCAACGGAAATGTTTATCTGCGAGGTATGCAACAAGACTTATAATAAACAGTACGAAGaggcacacaaacgattccacagcaacgaagcgaactacgactgcgaaatatgcaatagaaaattttacacaagcgaaaatttggagatgcatatgcgtgtgcattcgaacggaaaaaaattcacgtgctcctactgcaagaaagggttcctgacttacgaaagcctgcaaacccatattacaagccagtgccagcagaggcggtacgaatgccagtattgcgggcgccgcttcgcccgtccacacgaaaaagtcaagcacgaacgcatccatacgggagagaagccccacaaatgcgaaatatgcggaaaagcgttccgcgtaagctactgtttgacgcttcacatgcgtacgcattctggtactcgaccgtatcagtgccaacactgcggaaaacgcttcaaagCGCACAGTGTTTATAACCACCACCTCTTGACTCACTCCGATGTCCGTGCATACAAGTGTCCGTACTGCCCGAAGGCTTTCAAGACAGGCGTGCAATTAGCAGGGCACAAAAACAGTCACATAAAACCGTTCACCTGTACCGAGTGCAATCGTCCGTTTGCTTCGTTGTACGCTGTTCGTGCACATATGGAAACGCATCAAAGACAAAACAATTTGAAGTACAGCTGCTGGTTGTGCGGCGCTTCGTACGCGAGGGCGTTTGCGTTACGGGATCACGTTAAGGAACAGCACGCTGACGAGGAGCCCAAAGATGATAACGTTCTGGAGCCGGATGACGGCAAGGCACAAGACGAGTTGAGCAGTCACGATATGCTTCCTGTAGAAGAAGATACTGAGATTTTGATGGAACTCGACGACTGTGAAACTGAAACAGTCGAAGATGCGTCGGTTATTGAAATATCTGAAAATGTCGAATGA
- Protein Sequence
- MGTLQLECPLCCSETFPSHSSLKYHLLSIIDNLNCPACGSKFNNIHDLAEHLENDCQTEEHHNTEPTSHNYSTKFKSPSAGSLVKKNVKQNSISGGSSVNSTSAAVTILVKEECGDSDPAEIDIDESQLESFLDSSTLAKTLINSEGDSTGKDQEEYTTTEVTAEDETSDEDLYHCSSCDINFTSVEEHLRQYHEGHQVFLENVDSCDVDKAEFVKVDMDYHMDENEEVPTIELDDDDIEDKLDSSIIPTKQKNPQVLNTVTQQECFDKDGRLYTRKVVKIEKFWDEQPTREDPITQKYILIGKGKAEIATEEKLAKLKDKKKLLEVHQCSKCLVQFAKLEHYHRHDCEGNRDFKCAQCESSFYSSKSLCAHMKVHKETHKLVNSDNNDPLGPFICEICNTEFPVFKSLRLHRRMHDPIKVKEIEAPVTYGMLGEITSNEAPTEMFICEVCNKTYNKQYEEAHKRFHSNEANYDCEICNRKFYTSENLEMHMRVHSNGKKFTCSYCKKGFLTYESLQTHITSQCQQRRYECQYCGRRFARPHEKVKHERIHTGEKPHKCEICGKAFRVSYCLTLHMRTHSGTRPYQCQHCGKRFKAHSVYNHHLLTHSDVRAYKCPYCPKAFKTGVQLAGHKNSHIKPFTCTECNRPFASLYAVRAHMETHQRQNNLKYSCWLCGASYARAFALRDHVKEQHADEEPKDDNVLEPDDGKAQDELSSHDMLPVEEDTEILMELDDCETETVEDASVIEISENVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -