Eaen032143.1
Basic Information
- Insect
- Elmis aenea
- Gene Symbol
- SCRT1
- Assembly
- GCA_947652605.1
- Location
- OX393577.1:52428702-52446634[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.1 1.2e+03 1.2 0.2 3 11 66 74 64 81 0.60 2 13 0.00063 0.083 14.3 0.2 1 23 323 345 323 345 0.95 3 13 7.1e-05 0.0093 17.3 1.6 1 23 353 375 353 375 0.99 4 13 2e-05 0.0026 19.0 0.4 2 23 383 404 382 404 0.97 5 13 1e-05 0.0013 19.9 1.0 1 23 410 432 410 432 0.98 6 13 3.1e-05 0.004 18.4 3.2 1 23 439 461 439 461 0.99 7 13 0.00024 0.031 15.6 2.0 1 23 467 489 467 489 0.96 8 13 2.3e-05 0.0031 18.8 0.1 1 23 495 517 495 517 0.98 9 13 4.2e-07 5.5e-05 24.3 1.9 1 23 523 546 523 546 0.96 10 13 5.9e-06 0.00078 20.7 0.4 1 23 552 575 552 575 0.96 11 13 2.6e-05 0.0034 18.6 2.5 1 23 581 603 581 603 0.99 12 13 0.00012 0.016 16.6 0.4 1 23 609 631 609 631 0.94 13 13 0.11 15 7.2 0.1 1 21 637 657 637 661 0.92
Sequence Information
- Coding Sequence
- ATGTCTGTTAACAATTGTGTTAAAGATAACCAACACTGTTTAGTGTGTAATTCGCGTGTTGGAGTATCTACACGAAATTCGCTACAGATTTTTAACCAAGAAAGCTTAACATGCACGGAAAAACCTTTAAATCAAGTAATGTCCCAAGTACTGGGAAACACTATAACAGAGGAAAATGTACATTCGAGTCTTATCTGCAAAAAGTGTTTCAAATTGTTCGACGAGTTCGACGAATTGGAACAAAGGATAGGTGAAATTAAAGAAGAAGTAGTACTAAATTATAAAAAATCATTACAGAAATGTAAAAATGGTGATTTTGAGGAAGATAACGATGCAAAAACAAAAAATTCCAATCAAGCTGAGACTTCCACTTCAAAAGTTAGTGAAGCAAATAAAGAAAATCAAGTACCGAAAACAATTTTAGATATACCGTCCTCGGATGATGACACACAGGCACCTGCTGAAAAAAATAATTTACAGTCTATAGAAGATATTGAAATGGAATTGGTAAAAATTCACGGTGGTTTAGATAAATCTGACCCACCTAAAAGTATAACACAAATAGATTCTGAAGGTAACCCAACTTTCCATATACTTGGTAATGAAATAGTGGATGCTGGAGCTATTGATAATTCATCCGACTCTGATTATGAGCCTCCAGGAGAAGATAACACTGATGCATTATTACAAGCCGCTGCAATTGCTGAGAAAAGTTTAGAGGAAAAAGTGCGAATAAAACTTGAACCAGGTGTGGAAATTTCAGACAAGCCAAATATTTTGAAGAGAAAAGAAGTTCTGGATAATAGAAAATTTATGCCAAAAAAAATCAAGGAAGAAGTTTTACCTCCAGTTGTAAGCAGAAATGGAAGTGACTACACATGTTTATTATGTGAAGGAGACGATACTGTTTGTGGTGATGCTAAAGCCATTATCCATCATGTTAAAGCTAGTCATGATGCAAGAGTGTATATTTGTGATGTGTGTGGCCAAGATTTCCGTAAACGTAATGAACTCTCTTTACATTTAGATGAACATGTAGCAACCGAAGAAGGGGACTTTCAGTGTGAAGTTTGTAATAGAATCTTCAATAATTTACGTCTGTTTCGTATCCATAAGCGCATGCATTATCCTCAGAACAAAGCATGGACATGCGAAACGTGCGGGAAAAGATACAGTTCAAAAAATCTGTTGGATGAACATATAAATACTCATACAGGAGTGCGACCTTACATTTGCCAATTGTGCGGGAAAGATTTCGCTTCAAAATATACATTTAAAGCACATGAAAAGACCCATGAAGTTAGACCacgtccgttccagtgccaaaaatgtaataaatcgtttcttagtcaacagaatttgacccagcacgagcgaactcattctggcattaaagatttCTCTTGTCATCTTTGCAACAAGCAGTTTGGGTCAGCTCacaatctagaagtgcattctattgtccacaccggctataagccctttatttgtgggttgtgtggtaaagcatttgcgagaaaagccgaaatacgtgaccacgaacgtacccatacgggggaacgtccttaccagtgcgaattctgcggtacaaccttcagccaacgatcaaatttacaatcccacaaacgtgctacgcactacgatgacaaacgctacaaatgtgaagaatgtggcaaaggttttaaAAGGAGACGattattagattaccacataaaggcagcacatacaggcgaacgccccttcaagtgcagtgtctgtgaggctacatttgtgtaccctgagcattttaaaaagcacaggcgaattcatacgggagaaaaacctttcctttgtgaagtctgcggtaaagcatttaatagcagggataatcgcaacgcccatagattcgtgcattctgacaaaaaaccgtacgagtgtttggtatgtgcggcaggtttcatgcgcaagcctttgttgtaccaacacatgcaagcgcagggACATCTTAATGATACGATAATCGTTAACCAACCACATTTAACCACAGATGATGATCAAATTATTACGGTGAATGCAGATGGAGAGATGGAAATAGTAGAAAATAATCATGGAACATCGTTGGAAACCATAGATGTTACTGAAGAAGATGGAACAGAAGATTCTAAGTTATACATAGCTGAGCATATGTTAGTCGAAGATGGTGAAATGTTCCGAGACTCGAAAGGAAACATAATTGTCGGTAACAATCTTGACGATGATCAAATGGAAGAATCAGAGGCCGTTGAACATATCATTATTGACGGACAGCACATACAGTTTGCAGATGAAGGTGAAGACGGTGAAGGAGAAATTGAAGTAGAAGAAGGTGATGATGGTGAAGAAAGCACCCAGATTTTAGCTTCATCTGATGATTATGAAGAAATAATTGCCAGTAACGCTTTGGCCAATGGTGAAACGCAGCTTATTCATACTAGTAACGGTGAAATTCAGTTGGTGAAAGTACGCATTCCTAATGAAAACGGTGAGGAAGAAGAAGCATGGATTAAGATTGTACCGGAATAA
- Protein Sequence
- MSVNNCVKDNQHCLVCNSRVGVSTRNSLQIFNQESLTCTEKPLNQVMSQVLGNTITEENVHSSLICKKCFKLFDEFDELEQRIGEIKEEVVLNYKKSLQKCKNGDFEEDNDAKTKNSNQAETSTSKVSEANKENQVPKTILDIPSSDDDTQAPAEKNNLQSIEDIEMELVKIHGGLDKSDPPKSITQIDSEGNPTFHILGNEIVDAGAIDNSSDSDYEPPGEDNTDALLQAAAIAEKSLEEKVRIKLEPGVEISDKPNILKRKEVLDNRKFMPKKIKEEVLPPVVSRNGSDYTCLLCEGDDTVCGDAKAIIHHVKASHDARVYICDVCGQDFRKRNELSLHLDEHVATEEGDFQCEVCNRIFNNLRLFRIHKRMHYPQNKAWTCETCGKRYSSKNLLDEHINTHTGVRPYICQLCGKDFASKYTFKAHEKTHEVRPRPFQCQKCNKSFLSQQNLTQHERTHSGIKDFSCHLCNKQFGSAHNLEVHSIVHTGYKPFICGLCGKAFARKAEIRDHERTHTGERPYQCEFCGTTFSQRSNLQSHKRATHYDDKRYKCEECGKGFKRRRLLDYHIKAAHTGERPFKCSVCEATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCAAGFMRKPLLYQHMQAQGHLNDTIIVNQPHLTTDDDQIITVNADGEMEIVENNHGTSLETIDVTEEDGTEDSKLYIAEHMLVEDGEMFRDSKGNIIVGNNLDDDQMEESEAVEHIIIDGQHIQFADEGEDGEGEIEVEEGDDGEESTQILASSDDYEEIIASNALANGETQLIHTSNGEIQLVKVRIPNENGEEEEAWIKIVPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -