Basic Information

Insect: Elmis aenea
Gene Symbol: -
Assembly: GCA_947652605.1
Location: OX393578.1:27123645-27125123[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0031 0.41 12.1 0.3 1 23 36 59 36 59 0.93

2 13 1.5e-05 0.002 19.4 1.6 2 23 70 92 69 92 0.96

3 13 0.008 1 10.8 5.2 3 21 115 133 113 136 0.88

4 13 0.0024 0.31 12.5 2.3 1 23 169 192 169 192 0.97

5 13 4.9e-05 0.0064 17.8 6.7 1 23 204 226 204 226 0.98

6 13 0.017 2.2 9.8 7.0 1 23 241 264 241 264 0.94

7 13 3.6e-07 4.7e-05 24.5 5.0 1 23 297 319 297 319 0.98

8 13 0.00034 0.044 15.1 3.5 1 23 325 347 325 348 0.94

9 13 0.00016 0.021 16.2 0.4 1 23 354 376 354 376 0.97

10 13 1.7e-06 0.00022 22.4 0.4 1 23 382 404 382 404 0.95

11 13 5.7e-06 0.00074 20.7 0.4 1 19 410 428 410 429 0.97

12 13 0.00013 0.017 16.5 0.7 1 23 438 460 438 460 0.97

13 13 5.3e-07 6.9e-05 24.0 1.7 2 23 467 488 466 488 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0031	0.41	12.1	0.3	1	23	36	59	36	59	0.93
2	13	1.5e-05	0.002	19.4	1.6	2	23	70	92	69	92	0.96
3	13	0.008	1	10.8	5.2	3	21	115	133	113	136	0.88
4	13	0.0024	0.31	12.5	2.3	1	23	169	192	169	192	0.97
5	13	4.9e-05	0.0064	17.8	6.7	1	23	204	226	204	226	0.98
6	13	0.017	2.2	9.8	7.0	1	23	241	264	241	264	0.94
7	13	3.6e-07	4.7e-05	24.5	5.0	1	23	297	319	297	319	0.98
8	13	0.00034	0.044	15.1	3.5	1	23	325	347	325	348	0.94
9	13	0.00016	0.021	16.2	0.4	1	23	354	376	354	376	0.97
10	13	1.7e-06	0.00022	22.4	0.4	1	23	382	404	382	404	0.95
11	13	5.7e-06	0.00074	20.7	0.4	1	19	410	428	410	429	0.97
12	13	0.00013	0.017	16.5	0.7	1	23	438	460	438	460	0.97
13	13	5.3e-07	6.9e-05	24.0	1.7	2	23	467	488	466	488	0.96

Sequence Information

Coding Sequence: ATGGAGGATTCCAAAGAATTAATAAAATGTGAAAATAAAATTCCAACCAGCGAATATGTTACCGATACACATTCTATTAAATCAGAAATTAAAACTTCAAAATATTACGAATGTTTAGTATGTTCAATCAAATTTGCTACTCAAGAATTATTGGCTTCACATGAATTTAAAAGGCACGCTATAGGTAATAATCTTACAACAGAAACAAAATGTGATGTGTGTAATATTACGTTCAGCAGAAAGCAAAATATGTTAAGACATATCAAACAACAGCACACCGAAAACAGAGCACATTTAAAGAGAAAAAGAAGAAGAAGAGTAGACATTGTGTACTCAATATTTTGTGATGTTTGTCATAAAGGGTTTACTAGACATCGAGATTTGCATAAACATGGAACTGAAAAACATCCTGAAGTACATTTTTCTGAAAATAGCAATAAATTAACGGATCAAAATACATCTACCGTTGAATGTGACAATAAAACAAAGCCTGCTAATGAGCAGCACCAATGTTCTACTTGTAATAATAATTTTCAGACAATGGAGCAATTAACAGACCATTTAAATACTGAACATACCCAAGAAGCAACAATAGATAGTAAACTGCAACATGAATGTGAAGTATGTCATCGAAAATTTATAAGAAAATTTGATTTAAAAAGGCATAAACAAACACATACAGAAAAACCAGGGTCATCTAAAACCCGTGCATCTGCAGTGCATAACTGTGATGTGTGCTGTAAAACTTTTAGCAGAAAATATGATGTGCAAAGACACAGAAAACTGAAACATCCAAACGAGGTAAACACCGAGCATAAACCAACACAGCAACAGAAAAATGTAAAACTTTTTAACAAATGTAAAGTCACTGGGGAGGATGGAGTTTATTATAAGTGTGAACATTGTGATCGCAGTTTTCGTCAGTCCTACAATTTTATGAGGCATCAGTCAATTCATACAGGAGTGCGTGATTATTTTTGTCATATCTGTGCTAAAAACTTCCGAATGTCTGGGGATCTGTCTCGTCATATTACGCTACATCATGAAGGCGTAAAAAAttatgtttgcgacatatgcaataaaaagtttgccactaaagcaagcagagatgaacacagaaatattcatactaataatagaccctttgtatgtgatgtgtgtggtaaagcttttaaacaaaAAGCTTCATTGCGGATTCATAAAATATTTCACTCTGATACCTTTAACTTTTCTTGTAACATATGTGGAAAGAAGTATCGAAGAGCTTCAGACCTGAAAGTTCATAGCTGGTTACATACAGGTAACAAACCTCATAGTTGTGGTTTATGTGGAGCCATGTTTAGATTAAAACAGACTTTAAACAAACATATATTGGTACACGACAAATTAACTGAGTGTACTTGTGCTGAATGTGGAATGACATTTAGTCAACAAAAATACCTTAATATTCATATGAGAATTCATCGTAAAAAGAAATAA
Protein Sequence: MEDSKELIKCENKIPTSEYVTDTHSIKSEIKTSKYYECLVCSIKFATQELLASHEFKRHAIGNNLTTETKCDVCNITFSRKQNMLRHIKQQHTENRAHLKRKRRRRVDIVYSIFCDVCHKGFTRHRDLHKHGTEKHPEVHFSENSNKLTDQNTSTVECDNKTKPANEQHQCSTCNNNFQTMEQLTDHLNTEHTQEATIDSKLQHECEVCHRKFIRKFDLKRHKQTHTEKPGSSKTRASAVHNCDVCCKTFSRKYDVQRHRKLKHPNEVNTEHKPTQQQKNVKLFNKCKVTGEDGVYYKCEHCDRSFRQSYNFMRHQSIHTGVRDYFCHICAKNFRMSGDLSRHITLHHEGVKNYVCDICNKKFATKASRDEHRNIHTNNRPFVCDVCGKAFKQKASLRIHKIFHSDTFNFSCNICGKKYRRASDLKVHSWLHTGNKPHSCGLCGAMFRLKQTLNKHILVHDKLTECTCAECGMTFSQQKYLNIHMRIHRKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -