Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.03 2.3 9.7 1.8 1 23 44 67 44 67 0.94

2 6 1.6e-05 0.0012 20.0 3.7 3 23 89 109 88 109 0.98

3 6 0.012 0.93 10.9 0.4 3 23 118 139 117 139 0.96

4 6 0.038 2.9 9.3 8.8 1 23 147 169 147 169 0.97

5 6 1.9e-06 0.00015 22.9 2.1 2 23 176 197 175 197 0.97

6 6 0.057 4.3 8.8 0.4 3 23 205 227 203 227 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.03	2.3	9.7	1.8	1	23	44	67	44	67	0.94
2	6	1.6e-05	0.0012	20.0	3.7	3	23	89	109	88	109	0.98
3	6	0.012	0.93	10.9	0.4	3	23	118	139	117	139	0.96
4	6	0.038	2.9	9.3	8.8	1	23	147	169	147	169	0.97
5	6	1.9e-06	0.00015	22.9	2.1	2	23	176	197	175	197	0.97
6	6	0.057	4.3	8.8	0.4	3	23	205	227	203	227	0.86

Coding Sequence: ATGTTTCGATCTCATCCGGAGGTCTTCCTCAGGGCGAATGTGGATCGAGACGCGCGTATCGAAGTCGCTGATTTCGACAGTGATGAAGACGAAGCATCCTGGTACAAAGCAGTCGACAGCGTTGGGAAATTCATCTGCAGTTTCTGTGATAGGACGTATACAGTGCTCACCAGTCTTCGATTTCACGTAAAATCAAAACATCCCAACGAAGTTGGTGCTTTGAAGAAAAAAATCCTTAATAACAGAAGAAAAAGTCAACCACTCTGCCATCTCTGCAAAAAAAGATTTAAAGATCTATCAGACCTGACAAGCCATATAAAAAATCACAAAATAGAAAACGTCGCCAATTCTTGCCGCTTTTGTAACGCAGCGTTAAGTAACACAGAAGAGCTGATACAACATTTGAAAACTAATCATAATGAATTGCATAAAAAATTACATATCTGTCACACATGTGGTTACAGAACGAATAAGTTGTCACACTTTAAACAGCATAGCAACACGCATTTAAAGAAGAAGTTTCTTAAATGCTCATACTGTGATTACGCTACAACTCACTCGTCCAACTTGAAGAATCATGTTCGTATACATACAAAAGATAAACCGTTTCTATGTGATTTTGAAGGCTGTGGAAAAGCGTTTACGGATATGACCGGCTTGAGTTTCCACACACTGAAACATAATCCTGAGAAGAATATGTTGCATTGTGATAAATGTAGCTACAAGACTATATATAGACCTTTGAAGGTACACGTTGAAAGTCATATGAGGAGGTGA
Protein Sequence: MFRSHPEVFLRANVDRDARIEVADFDSDEDEASWYKAVDSVGKFICSFCDRTYTVLTSLRFHVKSKHPNEVGALKKKILNNRRKSQPLCHLCKKRFKDLSDLTSHIKNHKIENVANSCRFCNAALSNTEELIQHLKTNHNELHKKLHICHTCGYRTNKLSHFKQHSNTHLKKKFLKCSYCDYATTHSSNLKNHVRIHTKDKPFLCDFEGCGKAFTDMTGLSFHTLKHNPEKNMLHCDKCSYKTIYRPLKVHVESHMRR

Sequence clustering based on sequence similarity using MMseqs2