Esim001753.1
Basic Information
- Insect
- Elegia similella
- Gene Symbol
- TY3B-I
- Assembly
- GCA_947532085.1
- Location
- OX383953.1:3025940-3085359[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.8 6e+02 2.1 1.5 1 21 489 509 489 510 0.88 2 13 0.041 3.1 9.2 3.8 2 23 568 589 567 589 0.95 3 13 8.5e-05 0.0065 17.7 0.2 2 23 632 655 631 655 0.97 4 13 0.081 6.2 8.3 0.2 1 23 661 683 661 683 0.93 5 13 0.0025 0.19 13.1 3.3 1 23 689 711 689 711 0.98 6 13 0.19 15 7.1 0.0 2 19 722 739 721 742 0.90 7 13 0.14 11 7.5 0.1 1 23 819 841 819 841 0.97 8 13 3 2.3e+02 3.4 7.4 1 23 848 870 848 870 0.95 9 13 0.0016 0.12 13.7 1.8 1 23 912 935 912 935 0.95 10 13 0.00027 0.021 16.1 0.8 1 23 942 965 942 965 0.98 11 13 0.25 19 6.8 0.2 2 23 985 1007 984 1007 0.95 12 13 0.0044 0.34 12.3 0.2 1 23 1021 1043 1021 1043 0.96 13 13 0.0034 0.26 12.6 0.8 2 23 1088 1110 1087 1110 0.94
Sequence Information
- Coding Sequence
- ATGAAGAAGGCGACGCGGCCTAAGGCCACTAACGTGGCCAAGGCCGGTGAAGGAGCGGCTGCGAATGACGGCAGCGACACGGAGTTTGAGGCAGCTGCGGAGAACCCGTCGTGCGTGTATTCCGCGGGTGCAGCCGCCGCCCGTGATCAGGAGCCGCCGGCTATTTACAACCCGGAGCGGCTCATAGCCAGGATGATGGAGGAGTTCACCCGCACGCAGGCGGAACTGAACAGGTCCCTCATAGAGGCAATACAGTGTCGTGGTGATGGAAGATCCACCACGCCCCAGGAGGAACCGGTCACATCGCCGACTCTGCGACCGGCGACCCGAAATACAACGCGACCCAGCTTAGAAGTTTACGGCTTTGCGAGTAGCCGTACAGTGGTGCAAGAGGAGACACCAAACGTGCCAGGGCCGACCGGCGATGCCGATCACGCGCCGCGGGAGGTCAAGGGTGTTGGCACCGCGCTGCGCCTGGATGTTGCTGGTGATCACGCGCCGCGGGAGGACGAGAGTGCTCGCACCGCGCCGCGCATAGGTATTGATTGCGATCACGCGCCGCGGGAGGTCGAGAGGGCTCGCACCGCGCCGCGCGTAGGTATTGATTGTGATCACGCGCCGCGGGAGGTCGAGAGTGCTCGCACCGCGCCGCGCGTAAGTATTGATTGCGATCACGCGCCGCGGGAGGTCGAGAGTGCTCGCACCACGCCGTCGATAGAGAGTTCTGGCTACCCCGCGCCGGGATCGGGTGATCGCTGTTATGCCGCGTCACAGGGGGATATTGTCACGTGCCGTACTCCGCAGGTGAGTGAAGTCAACTGCCGCGCATTATCGGGCTGCGACGACGCCGAGCTTGCTCTGCGAGCTGATGAAGGTTCTAGCTTGACACCGAATGAGAAACGAGCACTTAACCTTTTTCTGATGAGGAGGAAGCCCCAGTTTAGTGACAGAGGCCCAGCAACGGAGTTTGCTATCCATAGGATCAAAGTGAAGGAGGGACAAGAGCCTATTGCCAGTCCACCTTTCAGGTTGTCTCCGAGCCGCCGAGATGCGCTCAGGAAGgagttagatcagctgttagctgatgatattattgaggagtgcgagtccccttggtcttcgaacgtcgtgctagtcgctaagaaggatggcagttatagggtgtgtatagactaccgtaagctaaacgcagtgactgaaccagacaggtacccacttcctaggatcgaggatgtgctgcacgcggccaagaccaATTCACCAAAAGTAGAAGAAAGAAAGGAGGAATCTAAAGATGAAACTGCTGAAAAGAGGGAGACGACAATAGAAGTGGAAGTGAAACAAGAGAACATAGTGAGCAGTGACGATGAAATTTGGATCGTACATACTGGGGAAGATCAACTCGAGAATATACTACAACCTAAACAGGGTGAGGAAGAAAAGCCAGTAACTCACAAAAGAACTCACACGTGTATTAATTGCAGTCAGATCTTCACGTCTGCTGAAGCGTTCGCCTCACACAAGTGTCGCAAGCGAGGCAGGAAACCAAAACCTATTGACGACATCATCATCAAGAAGGATGATGTTATGAAGAGACCTCAAGGCAGACCAAGAATCGTCGAAAGAAATCCTCACGATCTTCTTGTTGAGAGACCGCGCAAGAAAAAGAGCAAGGTGCCGACTTCGGATCCACAAATCGTGACGTGCCACAACTGCAACGAAAGTTTCACATCCAAAGTGCGGCTGAAATTCCATATGCAGTTCCATGAAACTACAAGTATGTTAACCTCGGATGGCCGGTACTCATGCATTGAGTGTGATGGCGCCACCTTCGACACTGAGAGCGAGTTATTCGATCATGTCCATTTCAAACATGACAAGCAGAAGAGGTGGCAGTGCCCGGTCGCTGATTGTGGAAAGACCTTTTATCTTCGGGCCACGCTAACGAAACATAGTCGCAGTCACACAGACACTCGTAGGTATGTGTGTGTGACATGTGGCAAGAGATTCTTGGACAAGCAGACTTTGGATGAACACGGAGTTACACACTTACAGATCAAGCCCTTCCAGTGCCACATCTGCCTGAAGCAGCTGACACGGCGCTCGCGTCTCCGCATGCATCTTCGCGCTCATGAAGAAGCGCTCACACCCAAACTGGTGCTGGTATGTGGGGTCTGCAGCCGCGCCTTTAGGGACCAGGCGGACGCGCAGGAACACGCGACGAAATCGACAGAATGTATAGAGGAATTCGCCAGCGAATTGAAGGAGGAGGCAGAAGAAGCGGTGCTGTCGCCCACTAGTGGGTTAGTGCGGCATACTGTGCAAGTTGTCGAATCCCCGAAGTTTTCAAAACCAATAAAACGCCAAGTGGACAATGCGACAGCGGAGTCACTGCTAGCCAAGATGGCGGACGAAGCGCGGACTATCATACGCGTAGTGGAGATAGAAAAGGCGTTCCGTTGCGAATATTGTGAAGACGTGTTCTACCTTGAAGAAGGTCTCAACACCCACCGCGCGATCCATAAGGGGGTAAAGAACCCCTTTACGTGCCACATCTGTAAGGTCACCTTCGCTACTTACTCCAGATGTACTACCCACAAAACGACGCATGGCTTCTACAAGCGCCCTCTAGCGGAAGCCAAGAAGCAAGCGGCCACCTCCAATGTGAAACCGGAAGCGGGGCCTGCCGCCACTGGCATACTGGGCTATGGCGGATTTCCGGTCGTGAAGCACTTCCTGTGTGAGGACTGCGGCCGTTCGTATCTTCACTGGACGTACCTTCAAGTGCACCGTCGCATGAAGCATGCCAACGATAGCTTCTTGTACAAGTGCAACCAATGCGAACTAACCTTTCCCAACAGTTGGAGTCTGGCTTACCACAGAAAGAAGATTCACTGCAAGTCAGGAATGGACGACGGCCCTTCTAAACCCAGCAAGGATGATTACAGGATTCCTTGCCGCGACTGCGAGGAGTTGTTGCCAAACAAAACTGCGCTTTATAAGCATAGGAAGAAGGAGCATAGTGACATGGCGTTGGGCATGACGAGTAAACCTGGGGCATACTTCTGTGGGTCCTGTGGGAAGCAATTCCCCACTCGCGCTGGACTCGACGCTCACAACAAGTCGCATGTGCGGTGCGATTGTGATGATCCTGACCCAGATATACCTTACTGCCCAGTTGTGGGCCCACAAGGCGGCAGACCATTTAGAAGATCAACCGTAATGCGCAACCATAGGTCGCTACCCGGTGTTCTTGCCTGGTCTTGTGCGAGGTGTCCTAAACGCTTCCGAGCTCGCAACGACCTGAAGACACACGTGAGGTTGAAGCATCCGGCGTATTTGGCTGTTATTGAGATAGCTAGTCTAAACCCGTCTCCCGAGGAAGTGATGGAAGTGCTGCGCGTGAACAACATACACCAAGAACGAATCATAGAGATCACTAAGATGTCCTTTGCTAAGGGCTCGTCGAGTGTAATCCCGAGCTGTGCGCGCGCTCTCTCTCTGCTAGCGAACGTGCCGCAGCAACCTGTGGACTACCAGGCGCACACGGAACCAGAATATCAGCATTTCAATATTTCCCGGTCACCGCATAGGCCCAAGATACTACAGCGAGGCGACGACAACCACGAAAACCAGTATCCTATGCCACTGAATGTGTCAGCTGACATCCCGCTGTTGGTGGAAGGCGAGCGGCTGTTACGGCTGCAACTAGACGACGGCATATTACAATAA
- Protein Sequence
- MKKATRPKATNVAKAGEGAAANDGSDTEFEAAAENPSCVYSAGAAAARDQEPPAIYNPERLIARMMEEFTRTQAELNRSLIEAIQCRGDGRSTTPQEEPVTSPTLRPATRNTTRPSLEVYGFASSRTVVQEETPNVPGPTGDADHAPREVKGVGTALRLDVAGDHAPREDESARTAPRIGIDCDHAPREVERARTAPRVGIDCDHAPREVESARTAPRVSIDCDHAPREVESARTTPSIESSGYPAPGSGDRCYAASQGDIVTCRTPQVSEVNCRALSGCDDAELALRADEGSSLTPNEKRALNLFLMRRKPQFSDRGPATEFAIHRIKVKEGQEPIASPPFRLSPSRRDALRKELDQLLADDIIEECESPWSSNVVLVAKKDGSYRVCIDYRKLNAVTEPDRYPLPRIEDVLHAAKTNSPKVEERKEESKDETAEKRETTIEVEVKQENIVSSDDEIWIVHTGEDQLENILQPKQGEEEKPVTHKRTHTCINCSQIFTSAEAFASHKCRKRGRKPKPIDDIIIKKDDVMKRPQGRPRIVERNPHDLLVERPRKKKSKVPTSDPQIVTCHNCNESFTSKVRLKFHMQFHETTSMLTSDGRYSCIECDGATFDTESELFDHVHFKHDKQKRWQCPVADCGKTFYLRATLTKHSRSHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEALTPKLVLVCGVCSRAFRDQADAQEHATKSTECIEEFASELKEEAEEAVLSPTSGLVRHTVQVVESPKFSKPIKRQVDNATAESLLAKMADEARTIIRVVEIEKAFRCEYCEDVFYLEEGLNTHRAIHKGVKNPFTCHICKVTFATYSRCTTHKTTHGFYKRPLAEAKKQAATSNVKPEAGPAATGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANDSFLYKCNQCELTFPNSWSLAYHRKKIHCKSGMDDGPSKPSKDDYRIPCRDCEELLPNKTALYKHRKKEHSDMALGMTSKPGAYFCGSCGKQFPTRAGLDAHNKSHVRCDCDDPDPDIPYCPVVGPQGGRPFRRSTVMRNHRSLPGVLAWSCARCPKRFRARNDLKTHVRLKHPAYLAVIEIASLNPSPEEVMEVLRVNNIHQERIIEITKMSFAKGSSSVIPSCARALSLLANVPQQPVDYQAHTEPEYQHFNISRSPHRPKILQRGDDNHENQYPMPLNVSADIPLLVEGERLLRLQLDDGILQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -