Basic Information

Insect: Elegia similella
Gene Symbol: -
Assembly: GCA_947532085.1
Location: OX383950.1:3324182-3345553[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0024 0.18 13.1 0.9 1 23 355 377 355 377 0.99

2 11 0.00041 0.032 15.5 7.6 1 23 384 406 384 407 0.95

3 11 0.26 20 6.7 1.9 1 23 411 433 411 433 0.97

4 11 0.086 6.6 8.2 2.1 1 23 438 461 438 461 0.97

5 11 0.0072 0.55 11.6 0.5 1 23 465 488 465 488 0.94

6 11 1.5 1.2e+02 4.3 0.3 3 21 502 520 501 525 0.91

7 11 1.8 1.4e+02 4.1 0.4 2 23 580 602 579 602 0.94

8 11 0.013 0.97 10.8 1.0 2 20 618 636 617 639 0.89

9 11 9.7e-06 0.00074 20.7 0.5 1 23 645 667 645 667 0.99

10 11 0.00015 0.011 17.0 3.0 3 23 676 696 674 696 0.97

11 11 4.4e-05 0.0034 18.6 1.3 1 23 702 725 702 725 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0024	0.18	13.1	0.9	1	23	355	377	355	377	0.99
2	11	0.00041	0.032	15.5	7.6	1	23	384	406	384	407	0.95
3	11	0.26	20	6.7	1.9	1	23	411	433	411	433	0.97
4	11	0.086	6.6	8.2	2.1	1	23	438	461	438	461	0.97
5	11	0.0072	0.55	11.6	0.5	1	23	465	488	465	488	0.94
6	11	1.5	1.2e+02	4.3	0.3	3	21	502	520	501	525	0.91
7	11	1.8	1.4e+02	4.1	0.4	2	23	580	602	579	602	0.94
8	11	0.013	0.97	10.8	1.0	2	20	618	636	617	639	0.89
9	11	9.7e-06	0.00074	20.7	0.5	1	23	645	667	645	667	0.99
10	11	0.00015	0.011	17.0	3.0	3	23	676	696	674	696	0.97
11	11	4.4e-05	0.0034	18.6	1.3	1	23	702	725	702	725	0.95

Sequence Information

Coding Sequence: ATGCGGTGCTGCGTACCAGGGTGTAAAAATGACACGAGGTACATCTCGAAGTCTCAGGGTATCACATTTCATGCATTCCCAACAGAGAAATACCTCCGCACAAAATGGCTCCGAGCTCTTAACAAGCAGGACTGGGAGCCAAAGGACCGAAGTACTGTCTGCTCAGAGCATTTCTTAAAAGAGGACCTGTACGAGACGAAAAGAGGACTGACGAGGGCCCGCGTGAGGGCTGTGCCTATTGTACTTGTGTGCAGAATATGTCTAACGATGGACAACAAGTTGTTTCCTATGAGGAAGTACAAATTGGAGCAAGCCTATGAACATCTCACAGGCTTAAAATTCAACACCAAGGACCGGTTACCAGAGACTCTGTGCGTGGAATGCGCGCAGCGACTTTTAAACTGCAGCAACTTTCGAAAGAAAAGCCTGAGAGCACACTCAGTCATGATGGAAATCATCAAACAACATAATTGCCTCACAATACAAAACATAAAAGACATCAATCGAGAAAATAATGAACTAATCTCGAACCTAACTACGACATATTTCGAACCAGATCATCAGAACCTATGTATAGAATTCGACGAAAATGCTATTCATAGGCCAATAGAAATGGATATGGACATAAAAGAAGAGAAAGACGACTTATTTCTAAACGAAGCTGATGAAAAAATAGATTTCACCGAAGAAAAAATTGAATTTGATACGAACAATGATAAAATTGAGGAAAACAATGAAATAGTTAACGATAAAAATGATTTTGATAACGATAACATCGATGATAATGATTATGTTCAAGACAGAGATTATTCTTCAGACGACAGTTTACCGTTAAAGAAAAGGAAAAAGAAAGAGAAAGTTAAAAAACAAAAGAAAGAAGTCAAAAAGGTCAGGAAAAAAGTAAAAGAAAAAGATGACCAACCAAAGATTGATAGGAGAAGAAAGCCGTTCTTAAATGATGATTTGAATGAAACATTATTTACAATTACTGATTTGACGTTTGAGGAACAGGTAGCGGAGATATTGAAGAGACAAGATAGTGCGAACTATAAAAATTCCGTTTTTAAGTGTACAGAATGTTTCAAAGGATTTTTGGATGAAGACGCTTATAATTCGCATATGAACAGACATTCTGTGGAATGCGGGGAATACCAATGCGACATCTGTAAAACCCACTTCAAGCATCCACACGCGTTACGCAAACACATAACAGCGCACCACACGCAAAGATTCAGCTGTAACCAGTGTCCGTACGAGACAACACACAGACAGACAGCAAGACTACACGAGAGGTGGCATAAGGGAACCAAATATAAGTGCCCACATTGTCAAGATGAATTTGTTAAATTCACGACATACATGGGTCACATCAGGATCAAGCATCCGTCTGATTTCGTGTGTCAACTGTGCGGCTATTCATTTGTCAGCGAGAAAGGCATTCAGTTACACAAGAAGCTGAAGCACAGAATGGACGACGTTCAGATACCAGACGACGGGCCTTTCTGCGAGCTATGTAACGTCCGTTTCGTGTCAGCCGAGGCTCACAGAAGACATATAAGCGTTTCAGCAAGACATAACACTAACGACAAAGAAGGCAGGGAATCGAACAAGCCGAAAAAAGGTCGCAAGCCAAGAGAAATTAAAGACAGAGAGAAACGCGAGAAAGAGATGGCTGATGATGAAGACAGTGATAGACGCGCGTATCCCAGTCAACTGCGGAAAGCTGAGGGGCCCATACCGTGCGAACAGTGTGGTCTCCAATTGGAAGATTCTCGCGCCTATCATGGTCACTTCCGACGAATGCACCCTGACAAGAACCGAACCAACTACCCCAGTATGAAATCACCGTGCATGTGCGAGGTGTGCGGCAGGATGTTCCAGAGTTACGCGCTCCTAAAGGACCACACATGGACACACACTGGCGAGCGCCCGTTCAAGTGTGACGTTTGCGGGAAAGCGTTCCGGATGAAGCAACGGCTCGTGGCGCACAGACGCGTGCACAGCACAGACAAACACACATACGGCTGCCAGCTGTGCGGGAAACAGTTCTCCACGCACAGCAACAGACAGAGACACATGTTTATCCACACCGGCTTAAAACCGTTCAAATGTGAAATGTGCGGTAAAGGGTTCAAGCACGCGAGTGAGAAGCGAGCGCATATAACTTACGTGCATCTCAAGAAGCCCTGGCCGAAGAGGTCTCGTGGAAAGAGACGGAATGATGGGAGACCGGGCCCAATGCCGCCTCAAGCCGTGCCTACAAGCGGGGAAATGGAGATGGCGACACTATGGCCGATTTGCGACCCCAAACTCGGTGACATGAACAATATCATCGAAGACAAACCCATGTATTATAATCTCAAGATTTAG
Protein Sequence: MRCCVPGCKNDTRYISKSQGITFHAFPTEKYLRTKWLRALNKQDWEPKDRSTVCSEHFLKEDLYETKRGLTRARVRAVPIVLVCRICLTMDNKLFPMRKYKLEQAYEHLTGLKFNTKDRLPETLCVECAQRLLNCSNFRKKSLRAHSVMMEIIKQHNCLTIQNIKDINRENNELISNLTTTYFEPDHQNLCIEFDENAIHRPIEMDMDIKEEKDDLFLNEADEKIDFTEEKIEFDTNNDKIEENNEIVNDKNDFDNDNIDDNDYVQDRDYSSDDSLPLKKRKKKEKVKKQKKEVKKVRKKVKEKDDQPKIDRRRKPFLNDDLNETLFTITDLTFEEQVAEILKRQDSANYKNSVFKCTECFKGFLDEDAYNSHMNRHSVECGEYQCDICKTHFKHPHALRKHITAHHTQRFSCNQCPYETTHRQTARLHERWHKGTKYKCPHCQDEFVKFTTYMGHIRIKHPSDFVCQLCGYSFVSEKGIQLHKKLKHRMDDVQIPDDGPFCELCNVRFVSAEAHRRHISVSARHNTNDKEGRESNKPKKGRKPREIKDREKREKEMADDEDSDRRAYPSQLRKAEGPIPCEQCGLQLEDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCEVCGRMFQSYALLKDHTWTHTGERPFKCDVCGKAFRMKQRLVAHRRVHSTDKHTYGCQLCGKQFSTHSNRQRHMFIHTGLKPFKCEMCGKGFKHASEKRAHITYVHLKKPWPKRSRGKRRNDGRPGPMPPQAVPTSGEMEMATLWPICDPKLGDMNNIIEDKPMYYNLKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00720727;
90% Identity: iTF_00640391;
80% Identity: iTF_00640391;