Basic Information

Insect: Elegia similella
Gene Symbol: -
Assembly: GCA_947532085.1
Location: OX383941.1:5641719-5654654[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.087 6.6 8.2 5.4 1 21 310 330 310 332 0.95

2 12 0.039 2.9 9.3 1.1 2 23 340 362 339 362 0.95

3 12 0.00021 0.016 16.4 2.2 1 23 366 388 366 388 0.98

4 12 0.043 3.3 9.2 4.0 1 23 393 416 393 416 0.97

5 12 0.0022 0.17 13.3 0.2 3 23 422 443 420 443 0.93

6 12 0.1 7.6 8.0 0.1 1 22 457 478 457 482 0.92

7 12 0.053 4 8.9 1.0 2 22 501 521 501 523 0.88

8 12 0.97 74 4.9 0.6 3 23 543 564 541 564 0.94

9 12 0.0011 0.084 14.2 0.3 3 23 579 599 578 599 0.96

10 12 0.0028 0.22 12.9 0.1 2 23 605 626 604 626 0.96

11 12 1.8e-05 0.0013 19.8 0.3 1 23 632 654 632 654 0.93

12 12 2e-06 0.00016 22.8 2.0 1 23 660 683 660 683 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.087	6.6	8.2	5.4	1	21	310	330	310	332	0.95
2	12	0.039	2.9	9.3	1.1	2	23	340	362	339	362	0.95
3	12	0.00021	0.016	16.4	2.2	1	23	366	388	366	388	0.98
4	12	0.043	3.3	9.2	4.0	1	23	393	416	393	416	0.97
5	12	0.0022	0.17	13.3	0.2	3	23	422	443	420	443	0.93
6	12	0.1	7.6	8.0	0.1	1	22	457	478	457	482	0.92
7	12	0.053	4	8.9	1.0	2	22	501	521	501	523	0.88
8	12	0.97	74	4.9	0.6	3	23	543	564	541	564	0.94
9	12	0.0011	0.084	14.2	0.3	3	23	579	599	578	599	0.96
10	12	0.0028	0.22	12.9	0.1	2	23	605	626	604	626	0.96
11	12	1.8e-05	0.0013	19.8	0.3	1	23	632	654	632	654	0.93
12	12	2e-06	0.00016	22.8	2.0	1	23	660	683	660	683	0.98

Sequence Information

Coding Sequence: ATGTTTTTCTCACCTAACTCGAATTTTGAAGCATCGGACATGGAGGTGTGCAGAATATGCCTGGATACGGATTCTAAACAATACAGCCTCCAACAAGGCTTACTCAAGGACTGTATGGACTCCATTACGGGATTCAATGATAAATACAACATAGAAGGCCTGCCGCAGTATGTGTGCTATGAATGCGCAGGACTGCTGCTGAAATGCTACAGGCTGGTGCAAAAAAGCCTGACAGCGCAAGCAACGCTGCTCGACATATTCGCTCAGAACGGCATGATTACCAAATCCCTAGTAAGAAAACAAGATAGGGATCAACTTAATCTTAAATCACCAATGGTCTTCCACACAACTACACCAACTTATTTATTTGAATTCAAATACGACGATGAAGAAAACTACTCAAGCCTCACCAATAGCGAATTTATCACTGAGTCTTTTGAGAAAAAAACCGAAATTAAAAACAGTGATTGTGACTTAGAAATTACTAATGAGTTCAAAGATTTTGTTGCTGTTGAATTAGATAGTGATATGAAACGTGAAAATGATTTGAAGAGTGAAGTGAAGGATGAGTATTCGGAGAGTGGTGATGATAACGATGAAGATTACGTCAAGGATGATTCGGACAGTGATGATTCGACTAATAATATATCACTGGCGAAACTTAGTGATAGGAAACACAAGAATAACAGAAGAGGCTCCATAAGCTGTGAAGTGTTTGTTGAAGAAAATTGTATTGATAAGGTTAGTAATAAAGCTGATAAAGCAGATAAAAAGACGAAAAGAAAATCTGTTGATGGTTACACTCCTGATGAACTTAGTATGCAGAAACATTTCAACATTGTAAAGTTATCGCTTCAGGAACAAATAGAAGACTGGAAGAAATCAATGGAGGAGAGGCCGTGGAAAGCCATCACTAAAGGGACGGTGTACAAATGTGAAACTTGTCAAAAAATATTCGCGCACATCACCACTTACCAGACTCACCTCAAATGTCACGATCCAAGTCGAGGTAAAGTCGAGTGTTCAGTCTGCAAGCTGCGGTTCAAGAACGACACGTTAATGAGAACCCATGCGAAGCGGACGCACGGCAAGAAGTTCTACTGCAAAACCTGTCCTAAGGTTTTTAATAACATCAACATGGCGAAAAAGCACCAAAGGCGTCATTCCGGTCACCTTTACAAGTGTACCCGCTGTCCATTCAGCACGGTGCACGAATCGTGTTTGAGCGCGCACGTGCAGAAACAGCACGAACACGCGCTGGCGTGCACGTTATGTGGCAGGCCGTGCATCAGTCAGCGGAGTCTGAGACAACATTGGGCTGTTGCACACCGGGACCTACCCGAGCCAGAGGTGACAACGAGCGCGAAGTACCGCTGTGAGCCGTGTGACCTCAGTTTCAGCACAGAGGGCGCTCGGCGCGTACATCTGCTCACTTCCGTGCAGCATCGGAAGAAGACCGACAACGGTTCAACAGCACCTCCAGACCCGTCTCTAAAGAACACATGTAAAACCTGTGGATTAGAGTTCCCCTCAGCGCAAGAGTTGTTGTCGCATTGTCGCGCGCAACACCCGCGACACAAGTACAAGAAGATCTGGCGGCAACCTGGTGACTCCTATCCCACCAACTGCGAGTTTTGTGGCGTGACAGTGAAAACGCGCTGGGACCACTGGTGGCACGTGCGGCGAGAGCATCCCAAGGAGCGGGACTCGTACCGGCGGGTGTACACGGCCATCTGCGAAACTTGCGGGAAGGGGTTCCAGAGCCCGACAAAGCTGAGACTCCACGAGCTGCGTCACAAGAGCCCCAGTGTGTCATGCGAGACCTGCGGCAGACTGTTCTACGACAAGTACGCCATGCTGAGACATGCGGCCACACACAACTCGGACAGACCCTACGCTTGCCCACACTGCCCACAGGCTTTCAAAGTTAAGGGGAATTTGCAGAGGCATTCTGTTGTGCACACAGGCGCCACACCGTTCGAGTGCACGCTGTGTGACAAGAAGTTCAAGCACGCCACCAGTCTCACTGTGCATGTGCGGACTGTGCACTACAAACTGCCGCCCCCGCCCCGGAAAAAGCGGGGGCCGAGACGACCCAGAAACAGGAGCGACATGAACATTGAACACGGGGATGTGATTTAA
Protein Sequence: MFFSPNSNFEASDMEVCRICLDTDSKQYSLQQGLLKDCMDSITGFNDKYNIEGLPQYVCYECAGLLLKCYRLVQKSLTAQATLLDIFAQNGMITKSLVRKQDRDQLNLKSPMVFHTTTPTYLFEFKYDDEENYSSLTNSEFITESFEKKTEIKNSDCDLEITNEFKDFVAVELDSDMKRENDLKSEVKDEYSESGDDNDEDYVKDDSDSDDSTNNISLAKLSDRKHKNNRRGSISCEVFVEENCIDKVSNKADKADKKTKRKSVDGYTPDELSMQKHFNIVKLSLQEQIEDWKKSMEERPWKAITKGTVYKCETCQKIFAHITTYQTHLKCHDPSRGKVECSVCKLRFKNDTLMRTHAKRTHGKKFYCKTCPKVFNNINMAKKHQRRHSGHLYKCTRCPFSTVHESCLSAHVQKQHEHALACTLCGRPCISQRSLRQHWAVAHRDLPEPEVTTSAKYRCEPCDLSFSTEGARRVHLLTSVQHRKKTDNGSTAPPDPSLKNTCKTCGLEFPSAQELLSHCRAQHPRHKYKKIWRQPGDSYPTNCEFCGVTVKTRWDHWWHVRREHPKERDSYRRVYTAICETCGKGFQSPTKLRLHELRHKSPSVSCETCGRLFYDKYAMLRHAATHNSDRPYACPHCPQAFKVKGNLQRHSVVHTGATPFECTLCDKKFKHATSLTVHVRTVHYKLPPPPRKKRGPRRPRNRSDMNIEHGDVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01302697;
90% Identity: iTF_01302697;
80% Identity: -