Basic Information

Insect: Elegia similella
Gene Symbol: -
Assembly: GCA_947532085.1
Location: OX383950.1:1457485-1473070[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 9.3e-05 0.0071 17.6 3.1 2 23 238 260 238 260 0.97

2 14 0.015 1.1 10.6 3.1 1 23 267 289 267 289 0.98

3 14 1.6 1.2e+02 4.3 3.4 1 23 293 315 293 315 0.93

4 14 0.041 3.1 9.2 3.4 1 23 320 343 320 343 0.95

5 14 8.9 6.7e+02 1.9 0.5 3 12 350 359 350 371 0.74

6 14 0.0097 0.74 11.2 0.1 3 20 380 397 378 399 0.94

7 14 0.33 25 6.4 0.1 3 23 407 428 405 428 0.94

8 14 0.045 3.4 9.1 0.1 3 20 437 454 435 456 0.93

9 14 0.3 23 6.5 0.4 3 23 463 484 461 484 0.88

10 14 4.3e-05 0.0032 18.6 1.7 1 23 487 510 487 510 0.95

11 14 0.017 1.3 10.4 0.9 3 23 563 583 562 583 0.96

12 14 0.0069 0.53 11.7 3.5 1 23 589 611 589 611 0.98

13 14 0.00031 0.024 15.9 0.1 1 23 617 639 617 639 0.97

14 14 0.00063 0.048 14.9 1.9 1 23 645 668 645 668 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	9.3e-05	0.0071	17.6	3.1	2	23	238	260	238	260	0.97
2	14	0.015	1.1	10.6	3.1	1	23	267	289	267	289	0.98
3	14	1.6	1.2e+02	4.3	3.4	1	23	293	315	293	315	0.93
4	14	0.041	3.1	9.2	3.4	1	23	320	343	320	343	0.95
5	14	8.9	6.7e+02	1.9	0.5	3	12	350	359	350	371	0.74
6	14	0.0097	0.74	11.2	0.1	3	20	380	397	378	399	0.94
7	14	0.33	25	6.4	0.1	3	23	407	428	405	428	0.94
8	14	0.045	3.4	9.1	0.1	3	20	437	454	435	456	0.93
9	14	0.3	23	6.5	0.4	3	23	463	484	461	484	0.88
10	14	4.3e-05	0.0032	18.6	1.7	1	23	487	510	487	510	0.95
11	14	0.017	1.3	10.4	0.9	3	23	563	583	562	583	0.96
12	14	0.0069	0.53	11.7	3.5	1	23	589	611	589	611	0.98
13	14	0.00031	0.024	15.9	0.1	1	23	617	639	617	639	0.97
14	14	0.00063	0.048	14.9	1.9	1	23	645	668	645	668	0.96

Sequence Information

Coding Sequence: ATGTGGTCTGGTGCTAATAGAGCCGCAGTGCCATGCCGAGCCTGCCTTTCTTCCGACGTAAAATTGTATAATATTCACGGCAATAACTTGGCAAAGAGTTATGGTCAACTTGTTGGAATTTCACTCAAAGACCCATACTCACAATACCTCTGCAGTGTTTGCGCAATCCTCCTGAAGAAGTTTGCAGAGTTCAGGGAGCGATGCAAGAAGGCTCACAATTTGTTAAGCGCTGCTGAGTATCATGGTAGACCTATAGCAGATATAGATGTTACAACATATATTATTCCACTGCGTTATACAAAGTCAGAAATACAAACGCAAGAATACGTAGACACAGTCAAAGAGAAAATTGAAGCCTTGGATTTCAAACAAGAAGACCAAGATGTAGATGAAGTGGATAATGCAGATAATGCTGATGATATAAATGATGTAATTGATGATCACGAAATAAAAAAAGAAAACTCAGATACTGACGAAGACAATATGACCGTAGCCTTCCTTATAAACAATTGCGAAAAGAAAAAGAAAGCCAGAATAAAAGTTAAAAACAAAAGAAATAGCATAAAAGAAAATCCGAAAACTGAAAAAGAAATTATAGAATTGGCGAAATCATACGATTTCGACGTTAAATTTTTGAGTAAAGAAGAACAATATGAAGAAATAGAGGAGAGAAAGAGACAGAAAAGCAGACGACCCGGGCCAACGTCAGCCCAATGCGAATACTGTGGCAAAAACTGCACAAGTCAAGACAAATTGAACGAACACTACAAAAGAGATCACGACCGAAGCGCCGGAGACTTTGAATGTCAAATCTGCTACTGTCGCTTCCCGTATTCCAGTAGATGGAGCCGTCACTTGCAAATGCACAAAGTATTGTTCAAATGCAAGATTTGTTCACACAAAACAAAATGGCAGGACTCTTTGTCGAACCACAATTTACAGCACAAAGGGAAAAAACATGTCTGCCAATTCTGTCAGAAATCATTCGTGAAAATTACTACTTATTTCTCTCATGTCAGATTATCTCATGCTGCTGAGTTACCGTGGTGTGAGTTGTGTGGGGAGTCGTTCCTTAATTCTAGAGGCATGAAGTTCCATAAATCGAGGGTGCATAAGAGTGTAGTACTTGACTTTGGTTGTAAGGAGTGTGGCGCGAAGTTTTCTAGTCAAGAAGCGTTGGATTCTCATGTGGTGTCGAAGAGGTGTGACCTGGTTGGCTGCGTGCTCTGTGGGGATGGATTTGCGACGCAACAACTTCTGAAGTACCATCTAATACAGAGGCACAGAACTGAAACGCCGCTCATAGACTGTGAAGGCTGCGGCGTAAAGTTCCATAACGATATGGCACTCCAGCGCCATCTGTCGGCGTGCGGAGTGGCAGTCTGCTGCGTGCAGTGTGGGGAGCACTTCGACGATGAACCACAGATGATGGAACATGTGGCTCAAGAGCATAGCAACTTCAAGTGTGAGGAGTGCAACAGATCGTTCTCAAACGCGTACTACTACAGGGACCACGTGTTCAGGATACATCGCAACCAGGAGAAGAGGGTAAGGGGTAAACGCGGGGTTCGCCGTGAGAGCGCCGAGCCATTAGAACCCCGGGTCCGGAAGTGGCGGCCTGCCGGCGAGGACGGCGCCGTTGTGTTGGAGGGCGAAGCCCGGATGGGGAGCCGCCTGGGGGCTATGTGCGAGATCTGTGGGAGAGTGTTCAATTGCAAGGCTCGACTGGATATCCATTTGCAGACGCACTCAGACGAGCGCCCTCACCAGTGCGACCAGTGCTCCAAGGCGTTCAGAACTACACTAGCACTCGAGTGTCACATGCGCGTGCACACAGGCGAGCGTCCGTTCAAGTGTACGTCTTGTCCGAAGGCGTTCAAGATGGCGGCGGCTCTGGCCAGACATAACTTGGTGCACTCAGGAGTCCGCAAACACGTGTGTCAGATCTGCGAGAAGACGTTCCAGACATCTACCAGCGTCAAGATGCATATAAAGTACGTGCATATGAAGATACCAGCGCCCCCACGCGTCAGGCGGCGGAGGGTCAAAGACGATGTTTAG
Protein Sequence: MWSGANRAAVPCRACLSSDVKLYNIHGNNLAKSYGQLVGISLKDPYSQYLCSVCAILLKKFAEFRERCKKAHNLLSAAEYHGRPIADIDVTTYIIPLRYTKSEIQTQEYVDTVKEKIEALDFKQEDQDVDEVDNADNADDINDVIDDHEIKKENSDTDEDNMTVAFLINNCEKKKKARIKVKNKRNSIKENPKTEKEIIELAKSYDFDVKFLSKEEQYEEIEERKRQKSRRPGPTSAQCEYCGKNCTSQDKLNEHYKRDHDRSAGDFECQICYCRFPYSSRWSRHLQMHKVLFKCKICSHKTKWQDSLSNHNLQHKGKKHVCQFCQKSFVKITTYFSHVRLSHAAELPWCELCGESFLNSRGMKFHKSRVHKSVVLDFGCKECGAKFSSQEALDSHVVSKRCDLVGCVLCGDGFATQQLLKYHLIQRHRTETPLIDCEGCGVKFHNDMALQRHLSACGVAVCCVQCGEHFDDEPQMMEHVAQEHSNFKCEECNRSFSNAYYYRDHVFRIHRNQEKRVRGKRGVRRESAEPLEPRVRKWRPAGEDGAVVLEGEARMGSRLGAMCEICGRVFNCKARLDIHLQTHSDERPHQCDQCSKAFRTTLALECHMRVHTGERPFKCTSCPKAFKMAAALARHNLVHSGVRKHVCQICEKTFQTSTSVKMHIKYVHMKIPAPPRVRRRRVKDDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -