Basic Information

Insect: Elegia similella
Gene Symbol: -
Assembly: GCA_947532085.1
Location: OX383950.1:1363545-1372273[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0038 0.29 12.5 2.4 2 23 266 288 265 288 0.96

2 12 0.0026 0.2 13.0 3.0 1 23 295 317 295 317 0.97

3 12 5.7 4.3e+02 2.5 4.0 1 23 321 343 321 343 0.96

4 12 0.00029 0.022 16.0 0.8 1 23 348 371 348 371 0.96

5 12 0.049 3.7 9.0 0.1 3 23 378 399 378 399 0.97

6 12 0.85 65 5.1 0.2 3 23 436 457 434 457 0.90

7 12 0.22 17 6.9 0.7 3 20 468 485 467 487 0.92

8 12 0.9 69 5.0 0.1 2 23 491 513 491 513 0.92

9 12 0.00025 0.019 16.2 3.5 1 19 519 537 519 542 0.91

10 12 8.9e-06 0.00068 20.8 0.1 2 23 605 626 605 626 0.97

11 12 1.2e-06 9.1e-05 23.5 2.6 1 23 632 654 632 654 0.98

12 12 2.8e-05 0.0021 19.2 0.3 1 22 660 681 660 684 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0038	0.29	12.5	2.4	2	23	266	288	265	288	0.96
2	12	0.0026	0.2	13.0	3.0	1	23	295	317	295	317	0.97
3	12	5.7	4.3e+02	2.5	4.0	1	23	321	343	321	343	0.96
4	12	0.00029	0.022	16.0	0.8	1	23	348	371	348	371	0.96
5	12	0.049	3.7	9.0	0.1	3	23	378	399	378	399	0.97
6	12	0.85	65	5.1	0.2	3	23	436	457	434	457	0.90
7	12	0.22	17	6.9	0.7	3	20	468	485	467	487	0.92
8	12	0.9	69	5.0	0.1	2	23	491	513	491	513	0.92
9	12	0.00025	0.019	16.2	3.5	1	19	519	537	519	542	0.91
10	12	8.9e-06	0.00068	20.8	0.1	2	23	605	626	605	626	0.97
11	12	1.2e-06	9.1e-05	23.5	2.6	1	23	632	654	632	654	0.98
12	12	2.8e-05	0.0021	19.2	0.3	1	22	660	681	660	684	0.91

Sequence Information

Coding Sequence: ATGTGGTCTGTCCATAGTGTATCAGGCAATATGAAGACGGACAAGTCTGCCGCATGCATAGGATGTCTCGCAACTGATGTGAAGTTGTATGACATCCATACAAACAATTTGGCTGAGACTTTCATGCAGTTTATTGGAGTTTCTCTGCAGAGCCACTTCCCCCACCACCTGTGCGTGTTCTGCAAACAGCAGCTGTCACGCTGCGCTGCGTTTAGGCAGAGCTGCTGGCGCGTTCAGGAGCTGCTAGTGGATGCAGATTTCCAAGGAAGAGCCTTAACATCAGCATACATACAAGAACTCGGTCAGAAAATAAAGCCTCTCTACACACGAACAGACATAAAAACTCTAGAATTAATAGAATCGGAAGAGAATGAACCAGAAATCAAACAGGAGGAATCCAGTAGAGATTCTGACGACTTCCCTTTGAGTATTATAGAGACTGCTAAGAAATTAGATATTACTGTAGATAAGGAAGAAGTAGATTCTGACAAAGAAGAGTTAGATTTAGAAAAAGATGATGAATGCTCCGATAAAAATTATTCGGAAAAAGAAGAATCTGAGAGCGATAGTGATACAGAAATAGAACCACTGCCAGTATTCGCTGATAGTGTTAAGAAAGAAGTTAAAAAGAAACCGTTACGAGTAAAAAAGGAGAGACGAAAAAAGAAATGTAAATCAGCCGAAGAGATAAAAAAAGACGCGAATACTTTCAATTTTGATGTTATATTCTTAAGCAGAGACGAACAAATGCAAGAAGTAGCTGATCTGAAGAGTAGAGAGATTAAATATGATAATAAATGTGCTCTATGCGGGAAGAATTTCAAATCGAAAAAGTCTAGAGAGGCACATTTCAAAAGATATCACGATGAAGAAGTTGGTTGCTTCGCTTGTGATATTTGTCAGTGTAGATTTAAAGCGAAAAATAGGTTAAATACACACATGAAGATTCACAGAGAAAGATTTAGGTGTAGAAGCTGCGAATTCGTAACGAACAGAGAATGTGGATTGAGACTACACTATCAGTTCCATCAAGGCAAGAAATATATCTGCGAATACTGCAAGAAGGATTTTTCGAAAGTATCAAGCTATATGTCCCACGTCAGACTGATACATGCTTCGTTGCTTCCGTGGTGCGAATTATGCGGGGAGTCTTTTATTGGCGAAAAAGGGGTGCAAGCGCATAAGAAAAGAGCTCATAAGGACATCGAAGAGCCTACAATATCATGCGACAGTTGTAAGACTAATTTCCTAGATGACAAAGCTTTAGAGAAACATAAAAGTCTAAATCGGTGTAATTTATCTAACTGTGTTCAATGTGGGGATGCGTTTGCGAGTTTGCAGTTACTGAAATACCACTTAGTGCAGAAGCATGGGTCTGAAGGGGAGTCGTTGACAAGTGACTGTGTGTCGTGCGGTGTGAGCTTCCATAGTAACGCGGCGTTTCAGAGACATGCTTGTGGGGCGAATGCTGTGTGTGTGCAGTGCGGGGATCACTTTGAAGATGAGCGGGCGCTGAATGAGCATGAGGCGAAGGAACACACAGCTCTGACGTTCTTTAAGTGTGAAGAGTGCGACAAGACGTTCACAAACGCGTACTACTTCCGCGACCACTGCGCGCGCGGCCACGAGCACCGGAAAGGATCTTCTGTGCCGAAAGAGAAGCAGGCGCCTCGCAAGCGCGGGCGCAAAGTAGACACTTCTAAAGAGACCACCATACGCAAGTGGCGAGTTGTCGACGGCGAGAGACGACTTGTGATGGAGAAACTCACGTCTGACGGGCAGCTGGTGGTGGAGGAGAGGATCCGAGATGCTGTGTGTGAAGTGTGTGGCAAGGCTTTTGCGAATGTATCCCTGTTGAAGTTGCACCAACGGTTGCACACCGGTGAGAAGTTGTTCACTTGCACGTACTGCAACAAGAAGTTCAACGTGTCTACACTGCTCAGGAACCACATGCGCGTTCACACTGGGGAGCGTCCGTTCAAGTGTTCAGACTGTCCGAAGGCTTTCAAGGAGTGGGCGGGCTACAAGAGGCATTTATTGGTGAGCAGACACATATTTTTCTGTAGAATTTAA
Protein Sequence: MWSVHSVSGNMKTDKSAACIGCLATDVKLYDIHTNNLAETFMQFIGVSLQSHFPHHLCVFCKQQLSRCAAFRQSCWRVQELLVDADFQGRALTSAYIQELGQKIKPLYTRTDIKTLELIESEENEPEIKQEESSRDSDDFPLSIIETAKKLDITVDKEEVDSDKEELDLEKDDECSDKNYSEKEESESDSDTEIEPLPVFADSVKKEVKKKPLRVKKERRKKKCKSAEEIKKDANTFNFDVIFLSRDEQMQEVADLKSREIKYDNKCALCGKNFKSKKSREAHFKRYHDEEVGCFACDICQCRFKAKNRLNTHMKIHRERFRCRSCEFVTNRECGLRLHYQFHQGKKYICEYCKKDFSKVSSYMSHVRLIHASLLPWCELCGESFIGEKGVQAHKKRAHKDIEEPTISCDSCKTNFLDDKALEKHKSLNRCNLSNCVQCGDAFASLQLLKYHLVQKHGSEGESLTSDCVSCGVSFHSNAAFQRHACGANAVCVQCGDHFEDERALNEHEAKEHTALTFFKCEECDKTFTNAYYFRDHCARGHEHRKGSSVPKEKQAPRKRGRKVDTSKETTIRKWRVVDGERRLVMEKLTSDGQLVVEERIRDAVCEVCGKAFANVSLLKLHQRLHTGEKLFTCTYCNKKFNVSTLLRNHMRVHTGERPFKCSDCPKAFKEWAGYKRHLLVSRHIFFCRI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00013391;
90% Identity: iTF_01302678;
80% Identity: -