Basic Information

Insect: Elegia similella
Gene Symbol: -
Assembly: GCA_947532085.1
Location: OX383950.1:1424212-1433202[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.046 3.5 9.1 6.7 2 21 274 293 273 295 0.92

2 14 0.00018 0.014 16.6 0.3 1 23 302 324 302 324 0.96

3 14 7 5.4e+02 2.2 5.0 1 23 328 350 328 350 0.94

4 14 0.00014 0.011 17.0 2.5 1 23 355 378 355 378 0.95

5 14 0.51 39 5.8 0.1 3 23 385 406 385 406 0.94

6 14 0.035 2.7 9.4 0.3 1 16 414 429 414 431 0.91

7 14 0.0024 0.19 13.1 1.3 3 23 443 464 442 464 0.92

8 14 0.66 50 5.4 3.9 1 21 473 493 473 494 0.93

9 14 0.022 1.6 10.1 0.3 3 23 499 520 498 520 0.91

10 14 0.051 3.9 8.9 4.6 1 23 523 545 523 545 0.95

11 14 0.13 10 7.7 0.4 1 19 598 616 598 621 0.90

12 14 8.6e-07 6.5e-05 24.0 2.0 1 23 627 649 627 649 0.98

13 14 3.8e-05 0.0029 18.8 2.4 1 23 655 677 655 677 0.97

14 14 0.00089 0.068 14.5 1.6 1 23 683 706 683 706 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.046	3.5	9.1	6.7	2	21	274	293	273	295	0.92
2	14	0.00018	0.014	16.6	0.3	1	23	302	324	302	324	0.96
3	14	7	5.4e+02	2.2	5.0	1	23	328	350	328	350	0.94
4	14	0.00014	0.011	17.0	2.5	1	23	355	378	355	378	0.95
5	14	0.51	39	5.8	0.1	3	23	385	406	385	406	0.94
6	14	0.035	2.7	9.4	0.3	1	16	414	429	414	431	0.91
7	14	0.0024	0.19	13.1	1.3	3	23	443	464	442	464	0.92
8	14	0.66	50	5.4	3.9	1	21	473	493	473	494	0.93
9	14	0.022	1.6	10.1	0.3	3	23	499	520	498	520	0.91
10	14	0.051	3.9	8.9	4.6	1	23	523	545	523	545	0.95
11	14	0.13	10	7.7	0.4	1	19	598	616	598	621	0.90
12	14	8.6e-07	6.5e-05	24.0	2.0	1	23	627	649	627	649	0.98
13	14	3.8e-05	0.0029	18.8	2.4	1	23	655	677	655	677	0.97
14	14	0.00089	0.068	14.5	1.6	1	23	683	706	683	706	0.97

Sequence Information

Coding Sequence: ATGCAGCAACAGCCGACGTGCCGCTGCTGCCTGGCGGTGGAAGGAAAGTTCATTTATATTCATGAAGTCAACACCACCCAACTTTATGCTGATGTAGTAGGAGTCCCGGTGGTAACTACAGACCGGTTTCCCCAACACCTGTGCACATTCTGTGCGAGGACCCTGCAGAAGTTTGCCCAGTTCAGAGCCCGGTGCCACAAGGTCTTGGAGGTGCTCTGCCAAACACTTGTCCAAGGCACTGAGGTAACTGTGGAATACACCCGGAATCTAACTTCTAATTATCAAGAACTAAAACCACAATACACACATACAAAGACTCTATTACTAGACGTTCTTACTCCTAACAATATCAATAATACTGGGAATCCGTTAGACTTGCCAGAACTGTATGTTGAGTTCAAAGTAGAGAAAGAAGAACAGAGTGCAAGTGAGATAAAAGACGTGATAGAAGAGTTACTTGAACCAAAAGAAGAGTGTTCTAAAGACGTTGTATATGTTGAAAAAGGAAATGAAACACAATATTTAGAAGAAGATGATAATTTTGATTCTTTCACTGATGATTTTGAAGAAGTAAAGATCGAAGACACTAAAACTAAAAAGAGAAAACTAGATAAAGTTCCTAAAAGAAAGATTAAAGATAAAACGAAAACTATAAAAAGAAAAAAGAAAGTCAAACGGAAACATAAAAGAGAATCCAAATCAAATAAAAGAGTGATGATGGAATTCGCCGAATCTATAGGTTTTAATTTAACAGAATTATCTCTTACGGAACAAATACAAGAAATAGCAGAGAAAAAGAAAGATCTGTCAAGCGGGCTGATCTGCGAGCAATGTGGGAAACGCTTCAACAACTTCAACTGTTTGAAGCGGCACAAAAACTGCCACGTATTAAAACCTAACAGCTTCATGTGTGACCTTTGTTCCTGGGTGTTTAAAAAGAAGAATTTACTAATAGAACACATGTTGGACCATAGATACATATTTAGTTGTAAATCATGCGATTTTAAGACAAAAAAACGAATAACTTTGAAAGGGCATCATGAGTTCCATCAAGGGAAAAGATTCCCATGTAAATATTGCGATAAAGTGTTCGAGAAGTTGAGTAGTTACTTTACTCATGTTAGATTTAAGCACGAATCGGAACTCCCCTGGTGCGAGCTGTGTGGAGAGGCTTTTATTGGAGAGAAAGGAGTCACTAGTCATAAGAAACTTACTCATAATATATTGGATGAATTCCCGTTTGAGTGTGTGAAGTGCAGTAAGAGGTTTAGAAGCAAAGCGGCGCTAGACAGAAATATAATAGTTAAAGGTTGCGAGCTCCCCAGCTGCGTTCACTGCGGCGAAGCGTTCCCCAGTGAGCAGCTGCTCAAACACCACCTCATCCAGAGACACATCGATGGCGCTGTCCCCACCACGTTTGACTGCAAGCACTGTATCCTCCGCTTCTACACCCACGACGCGCTGATGAGACACAGATGTGGGTGTGTGGCGGCGTGTGCGCAGTGTGGAGAGAGTTTTGAATCCCATCAGTTACTGATAGACCATGTGACGCTGAGGCATGACATATTCAAGTGTGAAGAGTGCGCCAAACAGTTCACCAGCAAACATTTCAAGATCCACTACATGTTGAAGCACTCCGGCGCTCCAAAGAAACGCGCGCGCGCTCGCAAAAGGACTTCGGGAGCTCTGGAAGACCGGGTACGAAAATGGCGCGTGGTAGACGGCGAAACAATCAAACAAGTGGAGACTCCAACAAAACCACAGGAGAGCGCCGACGACAAGAAGATGACGCACATCTGCGAAGTGTGCGGGAAAGGGTTCCTGAATTCGACTAAGCTGAGCATCCATAAGTGGCGAGTACACTGCCCAGACCACTGCCATCGCTGCCCACACTGCCCCAAGACATTCAAGACCAGAGAGGCGTTGGATATCCACATACGGGTGCACACTGGTGAGCGACCGTACCAGTGTTCGCAATGTCCAAAGGCGTTCAAACATCGCGGCGCATACACCAGGCACTTCTTGGTACATTCCGGACAACGCAACCACATGTGTACCATGTGCGAGAAGACATTCCAAACATCAACAGGCGTCAAGATGCACATCCAGACGGCCCACATGAAGATGCCATGGCCCGCCAAGAGTAGAAGACCTAAAGTCAACGACCTACTCATGAACTAA
Protein Sequence: MQQQPTCRCCLAVEGKFIYIHEVNTTQLYADVVGVPVVTTDRFPQHLCTFCARTLQKFAQFRARCHKVLEVLCQTLVQGTEVTVEYTRNLTSNYQELKPQYTHTKTLLLDVLTPNNINNTGNPLDLPELYVEFKVEKEEQSASEIKDVIEELLEPKEECSKDVVYVEKGNETQYLEEDDNFDSFTDDFEEVKIEDTKTKKRKLDKVPKRKIKDKTKTIKRKKKVKRKHKRESKSNKRVMMEFAESIGFNLTELSLTEQIQEIAEKKKDLSSGLICEQCGKRFNNFNCLKRHKNCHVLKPNSFMCDLCSWVFKKKNLLIEHMLDHRYIFSCKSCDFKTKKRITLKGHHEFHQGKRFPCKYCDKVFEKLSSYFTHVRFKHESELPWCELCGEAFIGEKGVTSHKKLTHNILDEFPFECVKCSKRFRSKAALDRNIIVKGCELPSCVHCGEAFPSEQLLKHHLIQRHIDGAVPTTFDCKHCILRFYTHDALMRHRCGCVAACAQCGESFESHQLLIDHVTLRHDIFKCEECAKQFTSKHFKIHYMLKHSGAPKKRARARKRTSGALEDRVRKWRVVDGETIKQVETPTKPQESADDKKMTHICEVCGKGFLNSTKLSIHKWRVHCPDHCHRCPHCPKTFKTREALDIHIRVHTGERPYQCSQCPKAFKHRGAYTRHFLVHSGQRNHMCTMCEKTFQTSTGVKMHIQTAHMKMPWPAKSRRPKVNDLLMN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00013410;
90% Identity: iTF_01302698;
80% Identity: -