Basic Information

Insect: Elegia similella
Gene Symbol: -
Assembly: GCA_947532085.1
Location: OX383935.1:2946142-2954323[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0046 0.35 12.2 1.1 2 23 38 59 37 59 0.94

2 14 1.7e-05 0.0013 19.9 1.1 1 23 97 120 97 120 0.97

3 14 8.5e-05 0.0065 17.7 3.2 1 23 122 144 122 144 0.98

4 14 5.8 4.4e+02 2.5 0.3 1 23 151 173 151 173 0.84

5 14 0.23 17 6.9 0.0 1 23 178 200 178 200 0.94

6 14 0.73 56 5.3 1.4 3 22 231 250 230 252 0.87

7 14 1.1e-05 0.00082 20.5 0.2 1 23 287 310 287 310 0.92

8 14 4.9 3.7e+02 2.7 0.4 1 23 319 342 319 342 0.93

9 14 0.00033 0.025 15.8 0.1 3 23 349 371 347 371 0.94

10 14 5.2 4e+02 2.6 2.4 2 20 376 394 376 397 0.91

11 14 0.00065 0.05 14.9 0.5 1 23 402 424 402 424 0.97

12 14 0.0038 0.29 12.5 2.4 3 23 432 452 430 452 0.95

13 14 5.4e-07 4.1e-05 24.6 2.8 1 23 458 480 458 480 0.98

14 14 3.8e-06 0.00029 21.9 3.3 1 23 486 509 486 509 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0046	0.35	12.2	1.1	2	23	38	59	37	59	0.94
2	14	1.7e-05	0.0013	19.9	1.1	1	23	97	120	97	120	0.97
3	14	8.5e-05	0.0065	17.7	3.2	1	23	122	144	122	144	0.98
4	14	5.8	4.4e+02	2.5	0.3	1	23	151	173	151	173	0.84
5	14	0.23	17	6.9	0.0	1	23	178	200	178	200	0.94
6	14	0.73	56	5.3	1.4	3	22	231	250	230	252	0.87
7	14	1.1e-05	0.00082	20.5	0.2	1	23	287	310	287	310	0.92
8	14	4.9	3.7e+02	2.7	0.4	1	23	319	342	319	342	0.93
9	14	0.00033	0.025	15.8	0.1	3	23	349	371	347	371	0.94
10	14	5.2	4e+02	2.6	2.4	2	20	376	394	376	397	0.91
11	14	0.00065	0.05	14.9	0.5	1	23	402	424	402	424	0.97
12	14	0.0038	0.29	12.5	2.4	3	23	432	452	430	452	0.95
13	14	5.4e-07	4.1e-05	24.6	2.8	1	23	458	480	458	480	0.98
14	14	3.8e-06	0.00029	21.9	3.3	1	23	486	509	486	509	0.98

Sequence Information

Coding Sequence: ATGGCTCTCTCCACGCAACCCGGGCAGGCGCCGGGCGGGCTCGTCGACACCCTGTACCTGCCACACTCTCTGTCACTCAAACTGACTACTATCGACCTGATCGGCGGCATCAAGTGCCCCCTCTGCCATATAACTTTTGCAAACAAGAAAGATTACGATAGTCATTATGTAAATCATAACACAGGGAGCCCTACTATAGTATACATGTGCGTCGTTTGCCACAAGGAGATAACTGGCTACCCGAGCTTCCGGAATCACTGCTACTCTATTCATGTAGTGAAGGATAGATTCAAATGCCAAGATTGCTCAAAACAGTTTTCAAAATCAAGCGTACTTCAACAACACATTGACACTGTACACAAGTTTGTATGTGTGCATTGTAAGAAACAATTTTCATCCAAGAAAGAAATGCAGATACATCAAATCACCCATAAGAGTGACAGTCCTCCATACGACTGCCAAACCTGCGGTCAGCAAATAGAGACAGCAGATAGTTGCGAGGAACACATCGACGACCACTGCACCCTGACATACTCCTGTCCAATCTGTAACGAAATTATACCTGACAAGGCCAAAACCGTTGATCATTTAACAAAACATTTTGGAAAAGTCACTGAAGAACAAGAAATTCCAGAGTCTGATGTTGAAATCACATTGGAGAGCTCCATAGATTTGATTGGTGGAATCCTGTGTTGCTTCTGCGACACAACTTACAAGAACCGAGTAGAATTGGATTTGCATTTTGCAGAACTTCATACAGACAGTGAAATAATATACTCCTGCAATATTTGCAGGAAGCAGTACACCAAATACCATCAGTTCGGCGACCATTGCTACTATCATTATTCCAAGGACAGATTTGAGTGCGACGAATGCGACAAGTCCTTCTCCCGCCTGTCGCTGCTAGTGCTCCACACGGAGGCGTATCACTCGGGCCCGGCGGCCGCCAAGCCGTTCGCCTGCGCGAACTGCCCCAACGCGTACGCGTCCGAGAAGCGGCTGAGCTGCCACATGCGGGAGGCCCACGGAGCGCAGGCCGTCAGCTGTCCCGAACACGGCTGCGGCCAGACATTTGATACACCAAAAGACCTGATATACCACCAAGCAGTCCATAAGTCAGGGAATAGATGCCAGCATTGCCTACTGCAGTTCACGTCTCTATCAGCCTGCGAGAGACACATCCCCGTTCACTGCAAGAAGCAGTACTCATGCCCCGTCTGCACCCGGAGCTACGCCGAGAAGTACCTCATGATGAAACACATCACCCAGCACTTTTCCTCTGTTTTACATCTCTGTAAAGTGTGCGGGAAAATATTCAACGCCAAGCATCGCCTCGTCGAACACTTGAAAGTTCATTCTGAAGTCCGAAACTTTAAATGCACCTACTGCGACAAGGCTTTCGTCAAGCCATACCATTTGAAGCAACACCTCAACATTCACACGGGTTTGAAACCCTACCAGTGCAACATGTGCCCGAAAACATTCGCGAGTTACCCGAATTATCACAAACACATGCGCAGGATGCACAACGTTTTAAAAGTACCAGTGAAGACGTCATTCGAAGTCGAAAATCATAACGAAAACGACACGAGCGCAAATAAAAAGGAAAATGACGCCATGCGACACAATAATAATGTAATGGAAGATTTAGTTGATTCAACAAGTTCTGAGATGGATACGTACATGTTGATGGAAGAGTCGGACGATAGCGTGGTGGAGCCGGACGGGATCGATCCTGTGGCCATGGAGCACGAGTCCAAACTGTTCGAGACTGCGGGTAATGTCTACACCGACCTCGATGCGCCTGAGTTCACTGAGTTGTTGCCGCAAGACAACCACGACGCCTTCGTAGCTGCCGTGAGTCCGGTGTTCCCGCCGGGGCCGCCGCAGGAGTACGGGCCCGACTTCGGCAAGGACGTGTCGGGTTACATCGACCTGGACGAGCAGCTGCTGCCACACATCGACCCGCTGCTCACCATCAAGAGCCAGTCCAACGTGTTCGACGCATTCGCCTTCGACGGCGCGGAGCCGGCCGAGCCCGGCTTCGGCCGCTGGGGCCCGCTGCTGGCCAGCGACGGGTTCTAG
Protein Sequence: MALSTQPGQAPGGLVDTLYLPHSLSLKLTTIDLIGGIKCPLCHITFANKKDYDSHYVNHNTGSPTIVYMCVVCHKEITGYPSFRNHCYSIHVVKDRFKCQDCSKQFSKSSVLQQHIDTVHKFVCVHCKKQFSSKKEMQIHQITHKSDSPPYDCQTCGQQIETADSCEEHIDDHCTLTYSCPICNEIIPDKAKTVDHLTKHFGKVTEEQEIPESDVEITLESSIDLIGGILCCFCDTTYKNRVELDLHFAELHTDSEIIYSCNICRKQYTKYHQFGDHCYYHYSKDRFECDECDKSFSRLSLLVLHTEAYHSGPAAAKPFACANCPNAYASEKRLSCHMREAHGAQAVSCPEHGCGQTFDTPKDLIYHQAVHKSGNRCQHCLLQFTSLSACERHIPVHCKKQYSCPVCTRSYAEKYLMMKHITQHFSSVLHLCKVCGKIFNAKHRLVEHLKVHSEVRNFKCTYCDKAFVKPYHLKQHLNIHTGLKPYQCNMCPKTFASYPNYHKHMRRMHNVLKVPVKTSFEVENHNENDTSANKKENDAMRHNNNVMEDLVDSTSSEMDTYMLMEESDDSVVEPDGIDPVAMEHESKLFETAGNVYTDLDAPEFTELLPQDNHDAFVAAVSPVFPPGPPQEYGPDFGKDVSGYIDLDEQLLPHIDPLLTIKSQSNVFDAFAFDGAEPAEPGFGRWGPLLASDGF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01302746;
90% Identity: -
80% Identity: -