Basic Information

Insect: Elegia similella
Gene Symbol: -
Assembly: GCA_947532085.1
Location: OX383950.1:11389644-11428036[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.6e-05 0.0012 20.0 0.8 2 23 46 67 46 67 0.96

2 15 0.0024 0.18 13.1 3.9 1 23 73 96 73 96 0.96

3 15 0.0016 0.12 13.7 1.8 1 23 101 123 101 123 0.96

4 15 0.00012 0.0093 17.2 2.2 1 23 129 151 129 151 0.98

5 15 0.00063 0.048 15.0 6.1 1 23 157 179 157 179 0.98

6 15 0.003 0.23 12.8 3.1 1 23 186 209 186 209 0.93

7 15 2e-05 0.0015 19.7 0.6 2 23 218 240 217 240 0.96

8 15 0.031 2.4 9.6 0.0 3 23 248 268 247 268 0.98

9 15 0.001 0.076 14.3 0.8 1 23 274 298 274 298 0.97

10 15 5e-05 0.0038 18.4 1.3 1 23 304 326 304 326 0.96

11 15 0.00023 0.018 16.3 0.6 3 23 337 357 335 357 0.97

12 15 0.43 33 6.0 1.5 1 23 364 387 364 387 0.96

13 15 0.019 1.4 10.3 1.5 2 23 394 416 394 416 0.91

14 15 8.4 6.4e+02 2.0 0.4 2 12 916 926 915 936 0.74

15 15 0.078 6 8.4 1.5 1 23 1066 1088 1066 1088 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.6e-05	0.0012	20.0	0.8	2	23	46	67	46	67	0.96
2	15	0.0024	0.18	13.1	3.9	1	23	73	96	73	96	0.96
3	15	0.0016	0.12	13.7	1.8	1	23	101	123	101	123	0.96
4	15	0.00012	0.0093	17.2	2.2	1	23	129	151	129	151	0.98
5	15	0.00063	0.048	15.0	6.1	1	23	157	179	157	179	0.98
6	15	0.003	0.23	12.8	3.1	1	23	186	209	186	209	0.93
7	15	2e-05	0.0015	19.7	0.6	2	23	218	240	217	240	0.96
8	15	0.031	2.4	9.6	0.0	3	23	248	268	247	268	0.98
9	15	0.001	0.076	14.3	0.8	1	23	274	298	274	298	0.97
10	15	5e-05	0.0038	18.4	1.3	1	23	304	326	304	326	0.96
11	15	0.00023	0.018	16.3	0.6	3	23	337	357	335	357	0.97
12	15	0.43	33	6.0	1.5	1	23	364	387	364	387	0.96
13	15	0.019	1.4	10.3	1.5	2	23	394	416	394	416	0.91
14	15	8.4	6.4e+02	2.0	0.4	2	12	916	926	915	936	0.74
15	15	0.078	6	8.4	1.5	1	23	1066	1088	1066	1088	0.98

Sequence Information

Coding Sequence: ATGGAGTCAACATCGAAAAGGGCAGCAACTTCTTCTGTTCGCTATACCTTCTCAGATGAAGATGATCAGGATTTGGAGATTGGACCAGTCAAAAGTGGGGGGAAGAAGAAGAAAGTGGAGAAACATAAAACGGCTGTCTGCAAAATATGTAAAAAAAAGTACACAGACCAAGAGGGTCTGAGACGTCACATGGAGCTCCACAAGGACACTTTGGACTACGAGTGCGACATATGCCACGCTCGCTTCAAAACTAGCCAATACCTAGGCCGACACCACAAACAGGTACACTCGACGCCGACGCACGAGTGCGAATTCTGCGGGAAAAAGTTCACCATGGCCGACAAACTTGACCAACATAGATATGTTCACACCGGTGAAAAGCCTCATAAGTGTGAAGTTTGCGGAAAGGCGTTCCGAGCGCTTTATTCGTTGAACACGCACCGTTTTACGCACACTAACGAAAAGCCGTTCAAGTGTCAATATTGTCCGTACGCGTGCCGAGACAGCTCGACGCTGCGGAAGCATCATGAACGGCACACGGGCACGTTGAAGTGGCACCAGTGTTCCTACTGCGACAAAAAGTACTACGCAAAGTCTCTACTGAAGAGCCATGTGTCCGAGCGACATTTCGCGGTGGACTTGAAGGTGATACCCTGTCCGCACTGCGACAGTAGGTTCAAGACAAACGGCCAACTCAACACACACATAAAAGTGGTTCACCAGCGTGCATTGCGCGCGGCGTGCGAAGTATGCGGGGTAGAGATCGCCAACAAAAACAACATGGCCGCGCATCTGCGCGTGCATTTGCACGTCAGGCCCTACAAGTGCAAGGTCAAGGAGTGTCAGAGGAGGTTCAAAGATGTGGGCGCCTTGAAGAAGCACTCGCTCATCCACAACCCGTCCGAACAACACGCGTGCGAAGTCTGCGGCAAGTTGTTCGCTCGACGCAACAGACTCAACGTCCACATGAGACGGCATGGTGACGACACCAAGGTCAAGATCATGTTCTGCGATTACTGCGGCTTCAGCTACGACAACAAGCCGCGTCTGATTCGTCACATGATGAAGCACATCCGCCATAGAAACACGTATGTGTGTGACGTGTGCAAGTTCATCACACACAGGAAGCTCAGCATCGAGAAACATATGCAGTACGGACACGGGGACGAGCATGACCGCTACTGCAAGATCTGCGACAAGAGCTACAAACTGCACGCCTACCTCATCCTCCACTATTACAACAGACATGGTATCCGCTACAAGACTCTCAAGAACATAAAACTGGAGACTTCGGTGACTATAAAGGAAGAGCCACAAGAGCCGATCCCTGACGTGGAAGTGGACCTGATGGAGATACAGAAGCAGGAGCCGTTGGCTGATATAATAACGGACGTGGCCTTGGACTGCGACGCAACGGACATATCGTACTCGAAGTCAGTGTTAAGCGAGGACATACAGCGGAGCATGCGACAGACTCAGCCCGCGGCCACGCATAGCGGCTTCCGCCGGAAGCTGCGGGGCAGGGCGGCGCTTATAGAGGATCAAAACACGTTATACGCAAGAAAAGAAAAGGACGTGAAGAAGCGTATCAATAGATTGCTAGCGCGCGTCCGGCTCCGGAAGTGGACGCGCGTACTAGAGCGGGCGCGGAGACTTTATAACCGCCGGATACTGCGCGCAGACACCGAACACGCAGAAAACAATATAAAAGTAAAGTTTGTCAACATGAACCAGGCTAACAATAATAAAAAGACTGAAACAGATCATAATAAAAACAATAACGATGAATTTATAAACGAAACTGATAATTTCGAATCAAAAGTTCCAAATGATGACATGGATATATTTGCACAAATAACTACACATACAAAAGACATAGGTTATGTTGGAACGGTTAATGACGAAATTAAAGAAAGCATAGTTGGGAAGGGAATTTCTTATTCCAGTGGCAGTCAGAGCGAACGAGATGAAGGTAATATGACAAATGATGAAACAGACACTGTGGAGTCCTTTGTAAAAGATATTCAAATAAACGAAGATGATGTAAGAAATATCTATGAAGATGTCCTTGACATTGAAGAAAATACTCTTGGTGAAATTTATAATGAGGAGATAGCTACAAGAACTGATAATTTAGAAACGATATGTGCAAATATTGATAACAAAGATGAAATTAATGCCGCAGTTGATGATATAGAAGATATAGATCAAAACGTTAATAACACAGAAAGAGATAATGATAACATTGATAATTCAAAATCCAAAAATGCAATTGTTTATACTATAAAAGACGATAATTTAAATAACATCAATAATAAAGAACTATCTGCTTTGGATTTAGAAAATAACGACGCTAATTTAGATAAAATAAGTAATGATAATTTAAGTTGTATAAAAACAATATCTTGTGAAGTTTATAAGCTACCGACAATCAACCCAAGTCTACCTTTAAAAGGAAATAATAAAGACAACAGTAATGAAATAAATAAAAATGTTATCAATGAAAATAGTGACTCAGAGAAAAGTAATTCGGAATCTGACCAAAATGGCGAGGATGAAATTACGGGTAGTGAAGACGGAAGAAATAAAATAATAAATGACGAAGTGGGAGAGAGAAGCAAAAACCTTAAGTTGAAGATTAACACGCATCAGTGTTATGTTTGTCATAAGCTGTACGAAACAAAGAAAAAACTGCTTGAGCACTGCCAAGAACATTTCGACATTTGTACAGACATTCCTTTAAAAAAATGTCCCCTGTGCAACTACGTCACGAAGAGAACAATAACGCAACATTTAAAACTCGTACACGATATAACTATAACTCTACCATATCACAAACTCCACGACAAAAGCAAATATACTGAAGAAACATCCAGATATTGTTACAACGTAAACGATAAAGTTGTCAAAGAAATAGAAATAATACCGAGCGTGAGAAACTTAAATAAAATAGCGTATGTCGAAATCGATAAAAACAATCGAAGAACTAAAGATCTGTCTGTAGCTAAAACGAAATTAGTAAAAAAATCCGGTGAATGGATCGTCGAACATGAAAAAATGAATGTTAACAAAGAGTTCTTACTGCCAAAGTTTGATAAAAAGGAAATCAAAAGGCTCAAACATGTCGGTGATGACTATCTAGATGTTATTAAAGTTTTGGGACGGTTAGCTAAAAGGCATAAAGCGAAAATGCTGTACCCTTGCAACGGATGCGAGAAACTTTGTCAGACATTCGCAGCATTGAAACTGCATAGTCGAAGACATGAGACGAACCCTAAACCGTTCAAAAAGAAGGTCTGGAAACACAAATTGAAGCCAAGCCAGTTGAAAGCGGTAAAAACCAGAAATAACCGGAAAAAAACAACCACTTACCACATAAGGCAAGCTGATCCTAAACCAATAGAAAATAAACATAAATGTGACAAGAAACTGATGGAGTTTTATGAAAAGAATGTTAAAGGAGCTGATATAGAATTCTGGCAATTTTTGAAGATTTATAATAGAATGAATAAGGAGCACGAAAATCTAGAAAATTTGGAAGAAACGAATGAATTTGGTGATTATACTGAAATTCCAAATGAGATAACAACGCAAAATGATGTTACATTGCAAAATAGTAAAGTAACATCAAAGAAAGACGTAGTAACATCGCAAAATAAAAAAAATAGATTAAGTAACTCAAAAGTTAGTAATAAGTTTACTAGAAAAAATGTGTTGAGTAAAGAGGAAAGGTTGAAGAGGCTTCGTATCAAGGAGCAGCTTCGGAAGAAAATTACTGAAAATAAATAG
Protein Sequence: MESTSKRAATSSVRYTFSDEDDQDLEIGPVKSGGKKKKVEKHKTAVCKICKKKYTDQEGLRRHMELHKDTLDYECDICHARFKTSQYLGRHHKQVHSTPTHECEFCGKKFTMADKLDQHRYVHTGEKPHKCEVCGKAFRALYSLNTHRFTHTNEKPFKCQYCPYACRDSSTLRKHHERHTGTLKWHQCSYCDKKYYAKSLLKSHVSERHFAVDLKVIPCPHCDSRFKTNGQLNTHIKVVHQRALRAACEVCGVEIANKNNMAAHLRVHLHVRPYKCKVKECQRRFKDVGALKKHSLIHNPSEQHACEVCGKLFARRNRLNVHMRRHGDDTKVKIMFCDYCGFSYDNKPRLIRHMMKHIRHRNTYVCDVCKFITHRKLSIEKHMQYGHGDEHDRYCKICDKSYKLHAYLILHYYNRHGIRYKTLKNIKLETSVTIKEEPQEPIPDVEVDLMEIQKQEPLADIITDVALDCDATDISYSKSVLSEDIQRSMRQTQPAATHSGFRRKLRGRAALIEDQNTLYARKEKDVKKRINRLLARVRLRKWTRVLERARRLYNRRILRADTEHAENNIKVKFVNMNQANNNKKTETDHNKNNNDEFINETDNFESKVPNDDMDIFAQITTHTKDIGYVGTVNDEIKESIVGKGISYSSGSQSERDEGNMTNDETDTVESFVKDIQINEDDVRNIYEDVLDIEENTLGEIYNEEIATRTDNLETICANIDNKDEINAAVDDIEDIDQNVNNTERDNDNIDNSKSKNAIVYTIKDDNLNNINNKELSALDLENNDANLDKISNDNLSCIKTISCEVYKLPTINPSLPLKGNNKDNSNEINKNVINENSDSEKSNSESDQNGEDEITGSEDGRNKIINDEVGERSKNLKLKINTHQCYVCHKLYETKKKLLEHCQEHFDICTDIPLKKCPLCNYVTKRTITQHLKLVHDITITLPYHKLHDKSKYTEETSRYCYNVNDKVVKEIEIIPSVRNLNKIAYVEIDKNNRRTKDLSVAKTKLVKKSGEWIVEHEKMNVNKEFLLPKFDKKEIKRLKHVGDDYLDVIKVLGRLAKRHKAKMLYPCNGCEKLCQTFAALKLHSRRHETNPKPFKKKVWKHKLKPSQLKAVKTRNNRKKTTTYHIRQADPKPIENKHKCDKKLMEFYEKNVKGADIEFWQFLKIYNRMNKEHENLENLEETNEFGDYTEIPNEITTQNDVTLQNSKVTSKKDVVTSQNKKNRLSNSKVSNKFTRKNVLSKEERLKRLRIKEQLRKKITENK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -