Esim010747.1
Basic Information
- Insect
- Elegia similella
- Gene Symbol
- -
- Assembly
- GCA_947532085.1
- Location
- OX383950.1:3175252-3180208[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0004 0.031 15.6 6.1 1 23 24 46 24 46 0.97 2 12 7.7e-06 0.00059 21.0 4.9 1 23 52 74 52 74 0.98 3 12 3.8e-06 0.00029 21.9 3.7 1 23 80 102 80 102 0.99 4 12 9.5e-05 0.0072 17.5 0.4 3 23 142 162 141 162 0.97 5 12 7.5e-05 0.0058 17.8 1.8 1 23 191 213 191 213 0.95 6 12 0.00063 0.048 14.9 0.1 2 23 220 241 219 241 0.97 7 12 3.3e-05 0.0025 19.0 1.0 1 23 247 269 247 269 0.98 8 12 0.00013 0.01 17.1 0.1 2 23 292 313 291 313 0.96 9 12 4.4e-05 0.0034 18.6 4.4 1 23 319 341 319 341 0.98 10 12 9.5e-06 0.00072 20.7 2.3 1 23 347 369 347 369 0.98 11 12 0.0069 0.53 11.7 7.8 1 23 375 397 375 397 0.97 12 12 0.0086 0.65 11.4 1.5 1 23 403 425 403 425 0.97
Sequence Information
- Coding Sequence
- ATGCATAATTCGTTGAAGTCGGTAGACACAGGTGAAACTGACCTACCGACGAATACTGAAGAGAAACCCTTCCGCTGTATCCATTGTTCGGCCACTTTCAGTCGGGACTACCACTTGAAGAGACATATCCGAACGCACACCGGTGAGAAACCTCACCAGTGCAACTATTGCGATGCCAGTTTCATTCAACTATACCATCTCAAAAGGCATTTGACTACTCACACCGGCGAAGCGCGGTACTCTTGCAACTTTTGTCAGCGAAAATTCAAACGAGACGATAATCTCAGATCACACCTCCGGACTCACGGTCAATATGCTATACCTAAATCTGAATGGAAAACTATAAAGAAATACGAATCCAATGACGAAAACGTGAGTGATATTAAACCTAAAGTAGATATAGATGGCGTTGCGTTAAATATGTGTGTTTATTGTAACCAAGCGTTTGATAAAGAGAGTGATTTAACTGAACATATGAAAAACCACGTTGGCGACGCGAAAACTGATGCCTCCAATAAGAATATCAAAGCTAAAAAGGGTGGATCTAATGATATATATGCTTCGAAACCTTTCCTTTGCAACCAGTGCGGGGCCAGATTTGGTCGACGCTACCACCTGGATAGACATTTAAGAGCCCACAGTAAACAGAGGCCGGTCGAATGCGAGTTTTGTGCTATAATATTTGCGGACAGAAACGATCTAAAAACTCATCTCAAAACACATGATTTGGAAATCAAATATGAATGCGACTTGTGCCAACGCAAATTTACCATAAAGAAAAACTTAGAAAATCACTTAGCGAAACACGCTGAAGGATTTAACGATGCAGAAAACGTGGATGGTAAAAAACCGTCAAAAGACAACGAGTCAGTCGTGTGCAACGTTTGCGGCGTTATTTTAAATAGAAAATCCAGTTTGAAAATCCACATGGTTCGCCATACAGGCGAGAAACCATTCGAATGTAATATTTGTCATAACAAGTTCACGCAAAAAGGCTCTATGACGTCACACATGAAGAAGCATACCGGCGAGAAACCATATGAATGTAGCATCTGCCATTGGAAATTTTACGGAAAGGGGAACTTAAACACGCATATGACGAAACATTCCGACGAGAAACCTCACGAATGCAACTTCTGCCATCGAAAGTTCAAACGGAAAGACGTTTTTAAAATGCATCTCAAACTACATACGGGCGAGACGCCGTTCGAATGTTATATTTGTTTGCGCAAATTCGCGCTTAAGAAAACTATGAAGAGACATGTTGCTAAACATAAGGAAAAGATTCCACAAATCCCACATGTCTAG
- Protein Sequence
- MHNSLKSVDTGETDLPTNTEEKPFRCIHCSATFSRDYHLKRHIRTHTGEKPHQCNYCDASFIQLYHLKRHLTTHTGEARYSCNFCQRKFKRDDNLRSHLRTHGQYAIPKSEWKTIKKYESNDENVSDIKPKVDIDGVALNMCVYCNQAFDKESDLTEHMKNHVGDAKTDASNKNIKAKKGGSNDIYASKPFLCNQCGARFGRRYHLDRHLRAHSKQRPVECEFCAIIFADRNDLKTHLKTHDLEIKYECDLCQRKFTIKKNLENHLAKHAEGFNDAENVDGKKPSKDNESVVCNVCGVILNRKSSLKIHMVRHTGEKPFECNICHNKFTQKGSMTSHMKKHTGEKPYECSICHWKFYGKGNLNTHMTKHSDEKPHECNFCHRKFKRKDVFKMHLKLHTGETPFECYICLRKFALKKTMKRHVAKHKEKIPQIPHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01302611;
- 90% Identity
- -
- 80% Identity
- -