Esim007899.1
Basic Information
- Insect
- Elegia similella
- Gene Symbol
- ZFX
- Assembly
- GCA_947532085.1
- Location
- OX383943.1:23324027-23330361[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.96 73 4.9 0.4 1 23 171 196 171 196 0.89 2 15 6.5 4.9e+02 2.3 2.9 1 23 243 265 243 265 0.95 3 15 0.96 73 4.9 0.1 6 23 277 295 277 295 0.94 4 15 0.19 14 7.2 0.1 2 23 306 328 306 328 0.93 5 15 8.1e-07 6.2e-05 24.0 0.6 2 23 351 372 351 372 0.97 6 15 4.6e-06 0.00035 21.7 3.7 1 23 379 402 379 402 0.97 7 15 0.00019 0.014 16.6 0.3 1 23 408 430 408 430 0.97 8 15 0.00014 0.011 17.0 1.5 1 23 436 458 436 458 0.97 9 15 0.00054 0.041 15.2 3.3 1 23 611 633 611 633 0.99 10 15 0.00073 0.056 14.7 2.0 2 23 640 662 639 662 0.91 11 15 6.8e-06 0.00052 21.1 4.8 1 23 668 690 668 690 0.97 12 15 1.1e-07 8.1e-06 26.8 0.5 1 23 696 718 696 718 0.98 13 15 0.00061 0.046 15.0 0.2 1 23 724 746 724 746 0.98 14 15 0.0023 0.18 13.2 2.3 1 23 752 774 752 774 0.91 15 15 0.0017 0.13 13.6 2.1 1 23 780 803 780 803 0.95
Sequence Information
- Coding Sequence
- ATGGACAACGAAACTGAGCAAATATTCTTGGTAAATTCCGGTGCCAATCCGGCAGCTGCAGCCGTGCAGAAGGGCGACACAGTCCCCGGCACCACGCAAGTCAACCTCGAAGATGTGCAGGATTTCTCGACAGTGTGCAGAACCTGTGCCACCATCACAGAGTTTGTCATCCCCATCTTTGAAGGGGAGGGTCTGCAGAACAACTTAGCTGATAAGATACAGAAACATCTACCTATACAGGTGTTGGAGAATGATCCGTTACCGCGCGTGGTATGCTACCAGTGTGCAAGCACGTTGCTGGCCTGGCACGAGCTGGTTATATGCTGCGTTCAAGCTGACGAGGCTTTGAAAGCACGGCTCACCCAGCTGCAACGGACACCCTCTACTGTATTGTTGGAATCTAAATGGAGCTCTTCCAAGAATGATCAAGACAAGTTATTTTACGTAAACGTAAGCAATGTACTCTCCCAATATCTGAAATCTATTGACATGGAAAGTGAAGTCTCCGCGTACGTCTGTCAGAAATGCCCCACCCACACGTCTTTACCGGACGTCAACACTTTGGCCCAACACATACGGAAAATACATTCATTGAGTGAGGAAACTTCTATAGAAGCATTTATACAAGATAACATTGCTTTTGAAGAGACTTTAAACTGGGAGAACTCAGATAGAGATCCGGATTCAGATGTAGAGGAGACGAGAGAAACTGAACTCTTACCTAACTTCTTTTGCCCATTTTGCGAAAGCATCTTCTCTTCAACGACACGACTTGTCTGTCACCTAAACACGCACATAGAAGTGTGTATAGACAAAGGTGTGATCTGTTGTGACAATGTTTATAAAGATAAAAGGAACTTCGTAGATCACTTACAAGAACAACATGTTGAGAGAATGTCCAAAGAAGTGTCCAATGTTTGCAAAAGTTGCGGTTACCAAGCCAAAGATGTCGACGATCTACAGTCACACGTCAATGAGAATCATGAGCGAAGACAAATGAGAAAGAAAAAGATTCAAATGAGTGCTAAAAACCAGAAGTTTTTCCCAGCCGTGTGTCCAGAATGCAACAAAACTTTTGCTAATAAATACAACATGTTAGTGCACATGAAGAGACACAACGAAGCGAAGCAGACGTTCCGCTGCGACCAGTGCGACAAAACCTACAGCAACCAAGGCAACCTGACGTCTCACCAAAAGCACTCGCACGCAGGCATCTTGAACCATGTCTGTTCGTATTGCGGCGAAGCGTTCCCCACGCGACGAGCGCGCGAAATCCACCTCCGCATTCACACTGGAATTAAACCCTTTGTTTGCAGTTACTGTAGGAAATCTTTCCGAGCGAAAAACTCCTTAGACCGCCACCTGGACATGCACTTAGATATAAGGAAGTGGACCGCCTGCCGGGACAGTCCCGGCTGTAGTTTCGACTTAGACGGGCTGGATAACCCAAAGCAACAACTGGACACTGGGCAGACTGATTACGGATCTATAGAAACTGATAGCAGACACGAAGAACAAACCAAAGATGAGGACGATGAACCGTTATCTAGTATGGCAACAAGAAAATCCAACGACGCTTATAGTAAATTTTACAGTGCCTTAGTTAGTTTTAGAAATCATTTTTTAAACGATCATGAGAAGAAATGTAAATATCCAGATTTTACTGACTCCAGTGATTCGGAGACGGTTGCCGAAGACGTAGATAGTAATGAAGGCAATTTAGATAGTTTTGACGATTTGACGCAGAGTAACATGCGCAAAGACAAAATGGACGAAGGGACGCGAATCGAACTCAGTCAAGTCCAGATTAAAATCAACGGAAAAGTTTACTACACTTGTAAAATATGCGGAAAAAATCTAAGTTCATCACACACTTACATATATCACAAAAGGATTCACACCGGGGAAAGACCATGCATCTGTCATGTTTGCGGAAAGCAATTCCGCGCGCCGAACGGACTCCAACGACACTTGACGGAAACGCACGAGCGTCTCCGACGACATTCCTGCCACTACTGCCCCAAAAATTTCGTGAACATGCAGAATCTGAAGCAACACATGAGAATACATACCGGAGAACGACCGTTCGTGTGTCCGCAATGCGGGAAGCGGTTCACTCAAAGCGGGTCGTTATACGTTCATATAAAAACTCATACCGATCATTTTCCATTCGAGTGCGCAGAATGCGGAGCCAAGTTCCGTCTACGCGCGGGGTTATCCCGCCATAGATTAAAACATAGCGGGGAGCGTCCGCATGTCTGTCCGCTATGTCAAGCTACTTTCAGACATAAGCATGAGCTGTCGGCGCACAGTGCCGCCCACTCGGACGCCAAGCCTCACGCCTGCGACTCCTGCGGAGCCGCCTTCAGGCAGAGACGCGCGTTACGGCATCACGCCAAGAGGATGCACGAATCTGACCTCACTAGGGACATCACGCACACGCTGATGTATCCTCAAGTCCCACAGTATTAA
- Protein Sequence
- MDNETEQIFLVNSGANPAAAAVQKGDTVPGTTQVNLEDVQDFSTVCRTCATITEFVIPIFEGEGLQNNLADKIQKHLPIQVLENDPLPRVVCYQCASTLLAWHELVICCVQADEALKARLTQLQRTPSTVLLESKWSSSKNDQDKLFYVNVSNVLSQYLKSIDMESEVSAYVCQKCPTHTSLPDVNTLAQHIRKIHSLSEETSIEAFIQDNIAFEETLNWENSDRDPDSDVEETRETELLPNFFCPFCESIFSSTTRLVCHLNTHIEVCIDKGVICCDNVYKDKRNFVDHLQEQHVERMSKEVSNVCKSCGYQAKDVDDLQSHVNENHERRQMRKKKIQMSAKNQKFFPAVCPECNKTFANKYNMLVHMKRHNEAKQTFRCDQCDKTYSNQGNLTSHQKHSHAGILNHVCSYCGEAFPTRRAREIHLRIHTGIKPFVCSYCRKSFRAKNSLDRHLDMHLDIRKWTACRDSPGCSFDLDGLDNPKQQLDTGQTDYGSIETDSRHEEQTKDEDDEPLSSMATRKSNDAYSKFYSALVSFRNHFLNDHEKKCKYPDFTDSSDSETVAEDVDSNEGNLDSFDDLTQSNMRKDKMDEGTRIELSQVQIKINGKVYYTCKICGKNLSSSHTYIYHKRIHTGERPCICHVCGKQFRAPNGLQRHLTETHERLRRHSCHYCPKNFVNMQNLKQHMRIHTGERPFVCPQCGKRFTQSGSLYVHIKTHTDHFPFECAECGAKFRLRAGLSRHRLKHSGERPHVCPLCQATFRHKHELSAHSAAHSDAKPHACDSCGAAFRQRRALRHHAKRMHESDLTRDITHTLMYPQVPQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -