Esim031339.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Elegia similella
Gene Symbol
-
Assembly
GCA_947532085.1
Location
OX383941.1:2147842-2153163[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.14 11 7.6 6.6 1 23 194 216 194 216 0.96
2 20 1.4e-05 0.0011 20.2 5.1 1 23 222 244 222 244 0.98
3 20 0.0044 0.34 12.3 3.5 1 23 250 272 250 272 0.99
4 20 0.00018 0.014 16.7 0.2 3 23 280 300 278 300 0.97
5 20 0.022 1.6 10.1 4.8 1 23 306 328 306 328 0.97
6 20 0.00016 0.012 16.8 1.2 1 23 334 356 334 356 0.99
7 20 0.00027 0.021 16.1 3.1 1 23 362 384 362 384 0.97
8 20 0.00014 0.011 17.0 5.0 1 23 390 412 390 412 0.99
9 20 0.00065 0.049 14.9 5.3 1 23 418 440 418 440 0.97
10 20 5.2e-05 0.004 18.4 1.0 1 23 446 468 446 468 0.98
11 20 5.2e-05 0.0039 18.4 0.4 1 23 474 496 474 496 0.99
12 20 1.2e-05 0.00095 20.3 5.6 1 23 502 524 502 524 0.98
13 20 2.3e-05 0.0017 19.5 0.8 1 23 530 552 530 552 0.99
14 20 1.8e-06 0.00013 23.0 2.4 1 23 558 580 558 580 0.96
15 20 0.00012 0.0088 17.3 0.4 1 23 586 608 586 608 0.99
16 20 9.7e-06 0.00074 20.7 0.4 1 23 614 636 614 636 0.99
17 20 1.4e-05 0.0011 20.1 2.0 1 23 642 664 642 664 0.99
18 20 9.6e-05 0.0073 17.5 6.6 1 23 670 692 670 692 0.98
19 20 9.9e-07 7.5e-05 23.8 4.0 1 23 698 720 698 720 0.99
20 20 2.5e-06 0.00019 22.5 0.8 1 23 726 748 726 748 0.98

Sequence Information

Coding Sequence
ATGGAACAAATTCGGAACAAACAGCTGTTGGCTCTGCACACTGGAGACAAGCGGCCCGTGTCAGCCTGCTACGTGTGTCACGCTCAGCTCAACAAGTGCCGCAAGCTGATGCTGACGGCTGCTAGAGCCGACGATGTCCTGACAGCCGTCTTAGAAACACGTTGTAAGACATCCTCTAACTTGGTAGCGCTTATCGGCAACAAGGCAGATGATCTGCGCGCGTCGCTAGGCACTATTCCTGCAGAATGTATCGAAACTACAGCGTTTCACGCGCCGATTCTGGTCAAAACTGAGACAGGGACCGAAAATAAAGTGAAACATGAAGTGGAATGTAATAATTTAAAAGATACTTTACAATCAGTAGACCAAGAGCTGGCTGATGTTGATGATAACAGTCGATTTGATGATGATGATGATGTTGACATCCCGTTAAAGAGTCTCAGGTCGGCTAGGAAAGCAACTAGCGGAGAAGAGCAGATAAAAAAAGGAGGCGTTTCTGTTCAGACATCGAAAGCTAAAAGCACGACTGTGAAAAAACAGCATGGGTCGCGAGATTCGAAACGAAGGACTAAGGGACCGTTTGAATGCATACACTGTCATCttaaagtcaaacactattccagccttcaaaggcatttagaaacacacacaaatgaaaggccttttgagtgtaacgtttgtcaaaaaacgttcaagagaagtggtcatttaaaaatacatgaacacacgcacactgggaagaagctatacgaatgtgaagtttgtcaaaaacagttcctataccagaacagtttcaaacatcatttacgtgttcacgctggtgagaaaccctacggatgtgatgtgtgtcagaaacgttttgctggctctggctctttaagaacacatttaaaaattcacacgggcgagaaaccgcacgaatgcacaatttgtaaaaaaagttttcttcttatgcataatttgaaaaaacatttagtaacccacactgatgagaaactgtacagatgcgaaatttgccaacgtggatttaaattagtttcgtatctgaaagagcactcgagaacccacagtagtgaaaaaccgtataagtgtgatatttgtcaatgtcgcttcaagaccccgaattatttgaaacaacattcaattgtacactcgagtgaagagccatatgaatgcagtgtttgtcaacgtcgatttaagttccagtgtagcttgaaaatacatttaaaaactcacacaggtgagaaacctcacaaatgtcatatatgttcgagtcgatttacgcaagccgggcacctaaaatcacatttagaaatacatagtgacgagaaatcatacaagtgtgatatatgccaacgtggattccggcaaaaagctggcctacgatatcacaaggtaactcattctgatgagagaccttatgaatgtaatatttgtcaacaaacctttaaattgcttgaaagtttgaaaggacatttaagaatacatacgggtgagaaaccacatgaatgccaagtgtgcgaaaaacggttttatagagagtctcatttgcggagccatttgcgaactcacactggtgagaaaccttttcaatgcgatgtatgtaatcggcgattctcagcatcgttaagtctgaaagcacatttaaaaactcacactggtgagaaaccacacgcgtgcgatgtgtgccagcgtcgctttagggatcgcagtgatctgaagaaacatttaaggatacacactggagagagaccttacgaatgccctgcttgtaaaaaaaaatttacgctagtcggctctcttaaagtacatttgaagacacacacaggggagaaacattataaatgccagttctgtcagcgtgtctttgcggcagcatctaacctgaaagtacatttgaagatccacacatccgagaaaccttatacttgcgatatttgtaaacgccagtttcgattaaaaagtaatataaaattacatataagaactcattatgacgagaaacctcacgaatgtaatatatgccatcgtcgctttaaagtcttaagttatttgagaaaacatttaaaaaagcactcgggcgagaaacgttataaatgccatatttgtcaacgccggtttacagaaagtggtaatttaaaaaaacacataaatagacacatggataaaaaacagttcgaatgtgatatttgtcagactacgtttagtgataagaCTGCATTGCGACGTCACGTACTAAAACACATGGAGGAGGGTTCTCATTAA
Protein Sequence
MEQIRNKQLLALHTGDKRPVSACYVCHAQLNKCRKLMLTAARADDVLTAVLETRCKTSSNLVALIGNKADDLRASLGTIPAECIETTAFHAPILVKTETGTENKVKHEVECNNLKDTLQSVDQELADVDDNSRFDDDDDVDIPLKSLRSARKATSGEEQIKKGGVSVQTSKAKSTTVKKQHGSRDSKRRTKGPFECIHCHLKVKHYSSLQRHLETHTNERPFECNVCQKTFKRSGHLKIHEHTHTGKKLYECEVCQKQFLYQNSFKHHLRVHAGEKPYGCDVCQKRFAGSGSLRTHLKIHTGEKPHECTICKKSFLLMHNLKKHLVTHTDEKLYRCEICQRGFKLVSYLKEHSRTHSSEKPYKCDICQCRFKTPNYLKQHSIVHSSEEPYECSVCQRRFKFQCSLKIHLKTHTGEKPHKCHICSSRFTQAGHLKSHLEIHSDEKSYKCDICQRGFRQKAGLRYHKVTHSDERPYECNICQQTFKLLESLKGHLRIHTGEKPHECQVCEKRFYRESHLRSHLRTHTGEKPFQCDVCNRRFSASLSLKAHLKTHTGEKPHACDVCQRRFRDRSDLKKHLRIHTGERPYECPACKKKFTLVGSLKVHLKTHTGEKHYKCQFCQRVFAAASNLKVHLKIHTSEKPYTCDICKRQFRLKSNIKLHIRTHYDEKPHECNICHRRFKVLSYLRKHLKKHSGEKRYKCHICQRRFTESGNLKKHINRHMDKKQFECDICQTTFSDKTALRRHVLKHMEEGSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-