Esim011617.2
Basic Information
- Insect
- Elegia similella
- Gene Symbol
- -
- Assembly
- GCA_947532085.1
- Location
- OX383950.1:15794828-15807776[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.4 1.3e+03 0.3 0.1 17 22 6 11 1 14 0.82 2 11 5.9 3.3e+03 -1.0 0.1 16 26 45 55 39 63 0.80 3 11 0.28 1.6e+02 3.3 2.7 5 41 182 215 181 217 0.92 4 11 0.012 7 7.6 1.9 18 41 223 243 219 245 0.82 5 11 0.067 38 5.2 4.3 13 41 246 271 237 273 0.78 6 11 5.1e-05 0.029 15.2 2.2 1 41 263 299 263 303 0.92 7 11 0.041 23 6.0 2.7 13 38 302 328 299 329 0.84 8 11 0.00029 0.16 12.8 0.7 17 41 334 355 329 357 0.89 9 11 0.0062 3.4 8.6 1.6 18 37 363 379 357 385 0.73 10 11 0.11 60 4.6 5.2 15 37 388 411 380 414 0.73 11 11 0.022 12 6.8 5.6 15 41 416 439 408 440 0.85
Sequence Information
- Coding Sequence
- ATGCATCGGAGTCCAGCAGTCTGCCGCATTTGCCTTTCAGTGGACGCGCCCATGAGCAACATTGACACCACTGCCTTGCAGCTCGTGTACGAGAGGCTGACGGGGGCTTTTCTTGTGAGTGGGAACAGGCCCGTGGCGGCGTGCTACATCTGCCGCGCTATGTTGTACAAGAGCCACAAGCTGATGGTGACCGCCACCAGGGCAGACCATGCGCTGACTGCTATGTTGGAGACGGCTGGCGAGATTACAGAAAAATCAGTTTCCCGGATTGACCGCGAGGCCATTGGCATGTGTGCGTCGCTTTCCTTCTCTGTGGCTGAATGTTGTGACAGCACGCTGGCAAAACTGGTCATGGTCAAAACTGAGCCGGAGTCAGAGGATGCTGACACCGCGACGGACAATGAGGATCCAGCCGGCGTTCCCGCGGCTGACGTGGACGAGACACGGGACTCCGATGAAGACGCGGGGGCGCGGGGCGGGGGACACTACGCGGACGATGGCGCAGCAGAGGGCCAACAGCCTGTGGCAGGAAGTTCCCGAAACAGTTATTATggcgagcctcagagcgctgacacaaggcaccagtgtcatgtttgtctgagggagtttcagtgtaagagtaaactacaaagacatttacgaactcacactggtgcgaaaccatttgaatgtaatgtttgcgaaaagcagtttagtcacaaaggtcatttaaaagctcatttaagaactcacactggtgagaaaccatataaatgttatgattgtggcaagcaatttaatcgaaaggataatttaaaatcacatttcagaacacacactggtgagaaaccattcgaatgtaagttttgtcgtcgtcgatttgctgacagcagtgcattaacaagacatctgagaactcacacttgtgagaaaccatttgcatgtaaaatttgcgataagcagtttaatcacaaatatcatttaaacgttaatttaagaactcatactggtgagaagccatataaatgtaatgactgtggcaagcaatttaatcgaaagggtaatttagaaagacatttaagaactcacactggtgataaaccatttgaatgtaatgtttgcgaaaagcagtttagtaacaaacatcatttaaacgttcatttaagaactcacactggtgagaaaccatttgaatgtaatgtttgcgtaaagcagtttagtcaaaaatgtcatttaaaaactcatttaagaactcacactggtgagaaaccatttgaatgtaagatttgtcgtcgtcgatttactcgcaacagtacattaaaaacacacctgagaactcacactgATGACACAGCAGAGGGCCAACAGCGTGTAGCAGGAAGTTCACGAAACCGTCTTGATTACTGTTTCGTGAACTTCCTGCCGCAGGTTGTTGACCAGCCTCAGAGAGACCCGCGCGCGCAGAACGTCATGTTTGTCTGA
- Protein Sequence
- MHRSPAVCRICLSVDAPMSNIDTTALQLVYERLTGAFLVSGNRPVAACYICRAMLYKSHKLMVTATRADHALTAMLETAGEITEKSVSRIDREAIGMCASLSFSVAECCDSTLAKLVMVKTEPESEDADTATDNEDPAGVPAADVDETRDSDEDAGARGGGHYADDGAAEGQQPVAGSSRNSYYGEPQSADTRHQCHVCLREFQCKSKLQRHLRTHTGAKPFECNVCEKQFSHKGHLKAHLRTHTGEKPYKCYDCGKQFNRKDNLKSHFRTHTGEKPFECKFCRRRFADSSALTRHLRTHTCEKPFACKICDKQFNHKYHLNVNLRTHTGEKPYKCNDCGKQFNRKGNLERHLRTHTGDKPFECNVCEKQFSNKHHLNVHLRTHTGEKPFECNVCVKQFSQKCHLKTHLRTHTGEKPFECKICRRRFTRNSTLKTHLRTHTDDTAEGQQRVAGSSRNRLDYCFVNFLPQVVDQPQRDPRAQNVMFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00640680;
- 90% Identity
- iTF_00640697;
- 80% Identity
- iTF_00640697;