Esim020188.1
Basic Information
- Insect
- Elegia similella
- Gene Symbol
- pol
- Assembly
- GCA_947532085.1
- Location
- OX383952.1:4933158-4936544[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-07 8e-05 23.1 0.1 4 40 11 46 8 52 0.84
Sequence Information
- Coding Sequence
- ATGGCGCCGATTAGAAATTACACTGCACAACAAATGGCCAGTGCTATCCAGAAGGTGAAGCAGGGATCATCAGTATCAGAAGCTGCGGCCTTATACGGTCTCCCTAGGATAACACTGCGCAATAAAATAACCGGGAAAACTCCCGAGAAGAAAAATAAAATAGAGAAATCTAAAAAGACTAAGAAATCTACAAAGAAAATAGTAAAACAAGTTTCATCAAGTTCGTCTTCTGATAAAACGGAAACGGATATAGAATACCAGGAAAGTGAATGTGATGAAGAGTTCCTAGATGATTTCAGTGAAGAAGAGTTTCGGCAATTTGACCAGCCAGAAATCTATACAAGATCTATACAAATAGAAGATAAATACCACCTTCCCAACATTGACATCTTGGACAAACTTGGACGGGCGCAGTTCTTCTCCACGATAGACTTAGCATCAGGATATTATCAAGTAGAGATGGAAGAAGAAGATATAGAGAGGACCGCGTTCTGTGTGTTTCAATAG
- Protein Sequence
- MAPIRNYTAQQMASAIQKVKQGSSVSEAAALYGLPRITLRNKITGKTPEKKNKIEKSKKTKKSTKKIVKQVSSSSSSDKTETDIEYQESECDEEFLDDFSEEEFRQFDQPEIYTRSIQIEDKYHLPNIDILDKLGRAQFFSTIDLASGYYQVEMEEEDIERTAFCVFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00640256;
- 90% Identity
- iTF_00640256;
- 80% Identity
- iTF_00640256;