Basic Information

Insect: Elegia similella
Gene Symbol: -
Assembly: GCA_947532085.1
Location: OX383946.1:4646131-4648356[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.7e-08 7.1e-06 26.5 0.0 2 37 16 51 15 57 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.7e-08	7.1e-06	26.5	0.0	2	37	16	51	15	57	0.91

Sequence Information

Coding Sequence: ATGGTTCGCACCTATAAACCGAAGACTGATCGAAGTAACATAGATGAGGAGAAGGTTAAAGCAGCCATAGATGACGTTTTGTCACATAAATTATCCATTAGGAAGGCTGCCGACAAACACAACATAAAAGCTGCAACCTTGCAGCATCGTATTGAAAAGTTTCGAAAAACTATGGACCAAAATGACGAGTCATCTTCAATGAGCTATAGCTCCAAATATTCTGTAGCACAAGTATTTTCAAAGGAACAAGAAAAAGTCTTTGCAGAATATCTAATAAATTGCAGTAAAATGCACCATGGGTTAACTTTGCAACAGCTTTTGACTCTTGCGTATCAGTTTGCTGATTTTTCCAACTGCAAGTATCCAGAATCATGGAAAAATAACGGTCGTGCTGGAATAGACTGGGCAGCAGGATTCAGAAAAAGAAATCAGGAGTTAAGCCTTCGTAAACCGGAAAATACCAGCGCTGCAAGAACATTTGCGTTCAACAAAACTGCAGTGGCAGATTTTTTTAATAATTATGAAGAAGTTTTGACACGTTACAAATTTACACCTGATCGAATCATAAATATTGACGAGACGGGAATTACCACTGTTTTATCTGCTCCTAAAGTTTTGGCTCAAAAACAACAAAAGCAGGTTGGACAAATAGTAGCATCTGAACGAGGAGAACTGGTCACATTTTGTGGCATAATTACTGCAATCGGTGGATCTCTTCCTCCTGTGTTTGTTTTTCCGCGCGTTCATTTCAAAGAACATTTTTTGAATGGTGCTCCTGAAGGAAGTCTTGGTTTATCAAACAAAAGTGGCTGGATGACTGCTGCGTTGCATCTAAAAGTTTTAGAGCACATTCAACGCCATACTTTGTGCACTAAGGAGAACCCAATACTCGTCATATGTGACAATCATGAATCCCACATATCTATAGAAGCAGTTAATTATTGTCGCGACCATGGTATTGTCTACTTATCACTTCCACCACATACTTCACATAAACTTCAGCCGTTAGATATCAGCGTTTTTGGTCCTTTTAAAGGAAAACTTAAAGTTGCTTTCAATGACTGGCAGGTCCAAGGAAAGACTGTGTTAATACAAAACGTCGCTATGCTTACAAAATCGGCTTTTATGGAATCTTTTACCCCACGAAACATCACAAGTGGCTTTGCAAAACCAGGGATTTGGCCTTTCAACAGACTTGCATTTAGCGACGACGATTTTGCTCCTGTAGAAATTTACGCAGAATGTTCTCGAGACCAAAGATTTGAACAAGAAAACATATTTACCCAGAATAGACATGAAGCAGTAACAGCCGATTGTGAACAGATGGAAGCACAACAAACTGAAGACGTTTGCGAAGAACCTGTCACATTCGAGCGCCCTGGTAGTCCAATTGAGGCTCCTTATAATATAGATCTAGCAGGTTCTCCGTCAATAATACCACCCCATAATGATGATATTTTTATGGCAAATACTGATGAAGCCCCTCTTGTTGAGGCTCGAAATGAATTTGAAGTCTCTGGGCATAATAACGATGTTCCTACAACTTCTAAACAAATATTTTCACCTGAAGTAGTGCGCCCATATCCAAAGAAGGACAAGACAATAGTGTCATCAAGAAAAGGAAAAGAGAAAGGGAAATCCAGAATATTTACCGATACGCCAGAAAAGGATAGATTACAAGGCTTGCACGATGAAAAAATGAAAAAACAGCAAGATAAGATTATGAGACAGCGAGCTAAAGAGTTAAAAACTGCAAAAAAATTGTTGGGTATAACGGAAAATAAGAAAAAGAAAAAATCTCGTCGCCCTCCAACTCCTTCATCTGAGACTGACTGTAGTCTAAACGATTCAGTAATATTGAGTGACGATAATGAAGAATTTGAAGACTTTGAGCATGAAGAGGAGAATTTTGACGCACTTCCTAACCCTGCAAATATAAAAGTTGGAGATTTCTTGCTTATCAAGTTTGAAAAGAAAACTACAGTTCTTTACTATACCGCCAAAGTTATTTCAAAATATAATTTGACAGAATATCACGTTTCATACCTAAGAAAGAAACCAAGATCTTACGTGTTTGTTTTCCCGAATCCAGAGGATACCGCCAGCGTTGATTTTAAAGATGTAGCCCTTCAGTTACCCCCACCAACTTTTTCAAAAGGTACTACGGCTCGCACAGCATCCATGTATAAGTTTTCTATAGATTTAAGTCAATACAATTTGCAGTAG
Protein Sequence: MVRTYKPKTDRSNIDEEKVKAAIDDVLSHKLSIRKAADKHNIKAATLQHRIEKFRKTMDQNDESSSMSYSSKYSVAQVFSKEQEKVFAEYLINCSKMHHGLTLQQLLTLAYQFADFSNCKYPESWKNNGRAGIDWAAGFRKRNQELSLRKPENTSAARTFAFNKTAVADFFNNYEEVLTRYKFTPDRIINIDETGITTVLSAPKVLAQKQQKQVGQIVASERGELVTFCGIITAIGGSLPPVFVFPRVHFKEHFLNGAPEGSLGLSNKSGWMTAALHLKVLEHIQRHTLCTKENPILVICDNHESHISIEAVNYCRDHGIVYLSLPPHTSHKLQPLDISVFGPFKGKLKVAFNDWQVQGKTVLIQNVAMLTKSAFMESFTPRNITSGFAKPGIWPFNRLAFSDDDFAPVEIYAECSRDQRFEQENIFTQNRHEAVTADCEQMEAQQTEDVCEEPVTFERPGSPIEAPYNIDLAGSPSIIPPHNDDIFMANTDEAPLVEARNEFEVSGHNNDVPTTSKQIFSPEVVRPYPKKDKTIVSSRKGKEKGKSRIFTDTPEKDRLQGLHDEKMKKQQDKIMRQRAKELKTAKKLLGITENKKKKKSRRPPTPSSETDCSLNDSVILSDDNEEFEDFEHEEENFDALPNPANIKVGDFLLIKFEKKTTVLYYTAKVISKYNLTEYHVSYLRKKPRSYVFVFPNPEDTASVDFKDVALQLPPPTFSKGTTARTASMYKFSIDLSQYNLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00640235; iTF_00640236; iTF_00012941; iTF_00640237; iTF_00012942; iTF_00640238; iTF_00012943; iTF_00640239; iTF_00012944; iTF_00640240; iTF_00012945; iTF_00146353; iTF_00640241; iTF_00012946; iTF_00146354; iTF_00012947; iTF_00146355; iTF_00012948; iTF_00146356; iTF_00012949; iTF_00146357; iTF_00012950;
90% Identity: iTF_00640235; iTF_00640236; iTF_00012941; iTF_00640237; iTF_00012942; iTF_00640238; iTF_00012943; iTF_00640239; iTF_00012944; iTF_00640240; iTF_00012945; iTF_00146353; iTF_00640241; iTF_00012946; iTF_00146354; iTF_00012947; iTF_00146355; iTF_00012948; iTF_00146356; iTF_00012949; iTF_00146357; iTF_00012950;
80% Identity: iTF_00640235; iTF_00640236; iTF_00640237; iTF_00012942; iTF_00640238; iTF_00012943; iTF_00640239; iTF_00012944; iTF_00640240; iTF_00012945; iTF_00146353; iTF_00012946; iTF_00146354; iTF_00012947; iTF_00146355; iTF_00012948; iTF_00146356; iTF_00012949; iTF_00146357;