Esim002721.1
Basic Information
- Insect
- Elegia similella
- Gene Symbol
- -
- Assembly
- GCA_947532085.1
- Location
- OX383933.1:13411086-13412108[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.2e-09 2.6e-06 27.8 0.0 2 43 15 56 14 58 0.94 2 2 8.2 3.4e+03 -1.3 0.0 17 24 130 137 129 138 0.85
Sequence Information
- Coding Sequence
- ATGGGGCGATATAAACGGAAAGGTGTTCGAGGTAATTGGGTGGAAGATGATATGAAGTTAGCAATATCTGCTGTAAAGAGAGGCGTTATGAAAGTGTACACAGCTGCAAAGAGATTTAATGTACCAAGACGGACTCTGAGACGATATTTGGCTGAAAATATAAACACTAAATCGACCTTAGGTAGAAAACCATTGTTAAACTCGGATCAAGAAAATTATTTGAAATCCCGCATTATCCGACTTTGCAACGTTGGTTACCCACTAACACAGCGAGTATTACGTTCATGTGTCAAAACGTTCTGTAATGAAAACAACATTTTAGGAAAAAGTCAAGGAGTAATGATTGGACGAGATTGGTTAAGAGGATTTCTAAGGCGTCATCCTAATATCAGTCAACGTAAAGCCCAAAATTTAAATCCCGCTAGAGCTCAAAAGCTTAATAAGGCAGTAGTATCTGATTACTTTGCGAAATTAAAGGATGTAATGGAAAAATATGATATAATGAAGAAACCAGAACGAATTTTCAATATTGATGAAAAAGGTTGTCAATTAAATTTACACAAAACTCCACAGGTTCTAGCAGAACGCGGTACAAAGAGAGTACACATAGTGGCAGCTGAACATGGAGAATCAGTGACCGTAGTATCTTGTGGTAATGCATTAGGGCACGCGATACCACCCATGATTTTATTCAAGGGCAAAAGAATGAAAGGAGAATGGCTCGATTCATTACCTACCGGTGCTGTAGCTCAGATGACTCCCAAAGGAAGTATGACCATTGAGGCATTTGTGAATTGGATACACCACTTTTCAAAATTCAAATTACCAGGAAATGTGCTTCTCATATTCGATGGTGCCAAGTGCCATTTGGATTACTCTATTGTACAAGTAGCTGAAAAATACGAAATCAAGCTTTTCTGCTTACCCAGTAATACGACCCATGAGCTGCAGCCCATGGATAAAAGTGTATTTAGGTCGTTTGAGTATTACTGGGATGAGGAAGTACTTAGATACTGGTCTTAG
- Protein Sequence
- MGRYKRKGVRGNWVEDDMKLAISAVKRGVMKVYTAAKRFNVPRRTLRRYLAENINTKSTLGRKPLLNSDQENYLKSRIIRLCNVGYPLTQRVLRSCVKTFCNENNILGKSQGVMIGRDWLRGFLRRHPNISQRKAQNLNPARAQKLNKAVVSDYFAKLKDVMEKYDIMKKPERIFNIDEKGCQLNLHKTPQVLAERGTKRVHIVAAEHGESVTVVSCGNALGHAIPPMILFKGKRMKGEWLDSLPTGAVAQMTPKGSMTIEAFVNWIHHFSKFKLPGNVLLIFDGAKCHLDYSIVQVAEKYEIKLFCLPSNTTHELQPMDKSVFRSFEYYWDEEVLRYWS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -