Basic Information

Insect: Elegia similella
Gene Symbol: -
Assembly: GCA_947532085.1
Location: OX383935.1:6116360-6136506[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 4e-11 1.7e-08 34.9 0.0 4 36 465 497 462 500 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	4e-11	1.7e-08	34.9	0.0	4	36	465	497	462	500	0.94

Sequence Information

Coding Sequence: ATGACGCGACTGCACAAGCCAATAGGCTGCCAAAGCCTAGTGGCTTGTGCAGTTCACTCACTTGGAAAAATGGAGGAAAATGGTTTCACATTTGTGACGTCGCTGAAGGGCAAGCGCCTGATTCGCTACAAGAACTACAACTTCTACGCGTGTCGCTCCACAGGGAAGAGAACGCGTTGGGTGTGCTCCACACACCACACCAAGGGATGCCGCGCCGCCATCATCACCTTCGACAATGAAGCCATTCGCTACTTTAAAAGTTCTAAACGAACAGACAGAGGAAGCGACTTCATTATACAGGGTGATTTTAAATTACCTGGCAGTGTTTTGGTGTCTGAATCAGAATCCCTAATAGAATATGGAACCTGCAAGAAAAAAGATGACGACTTTTATCCAGGTCTAGCAGCAGCTAGCAGCTGGTCAGCTTCGGAGCACATCCTCAAGAGAACCAGCACGCGGAGACGCTGCGTGGGCTGCTATGCCAACAACAGGTTGGCCTTTATTGCCTCCGTGGCGTCCAACAGAACCAAGAAAATCAGAACCGTTTGTTGCAAATGTGACAGAACTGCAGTTTTAACCCTGAATCCAAAACGTGAAGGCGGTTCCCAATTAATTGTTATCAAGAAGGAACTTCAAGTCAATTCAAATCTACTGATAGGACCACCTTATGAATGCAATGAATGTCATCGTCATGTCACTTCAAAAGCCCATATGAAAAAGCACTTGATGACGCACAGCGACGTCAGACCATATCAATGTGCTATTTGTGACCGCAGGTTTAGAGATAAGAGCAAGATGGCGGAGCATATGAGAAGTCACACTGGAGAGAAACCGCACGAATGCGTAGTCTGCCGGCGGCGGTTCGCTCTGAAACATAACTTAAAAACACACATCAGAACTCACACAGATGTAAATACAAAAACCTCGAATATATTCACAAGTTTTAAAATATTCACCGCTTTGTCAGAAAACGAGAATTATTGTAATGAAGTGAAGACGCGTGGTGAAGTGATTGAGGAGCGTGGCCCACCACTTGTGAAGACTCCTGTGGCTTCCCGACCTCCAGACGCGATTAGGTACGACAACATAGCTCATTTTCCACGTTATATATCACAAGGACGATGTGACCTGCAATTTATCCACTCCAAAAAGGGAAACCCCATGCTGGTACTAAAAGGATACACATATTACCGCCAGACTGTGTCTAGTAATAGCAGAGTGCGCTGGTTGTGTGCGACCCACCACTCCCGAGGATGCAACGCCGCTGCGCAGACCTTCAGGCACGAGTTCTTGCTGTCCACCAGGAATGAACACACGCATGCGCCAACTAAAAATGTTAAGCTAGACACTAaAACTACGGGAGCAAGGAAACACAAAACATATAAAACACAACAGTTGACGGCGGCTTTAGAATCGATTACTAGTGGCATGAGCATATACAAAGCTTCAAGACGTTTTAACATACCAGAGTCGACGCTAAGAGACAAACGAGACGGAAAGTATATTCACGAAAAAAGTGGCGTTCAACCTGTGCTGAACGTGCAGGAGGAGACAGAAATTGTTGATTGGATCCAACACCTCGACCAAAATGGATTCTGCGTTACAAAGAGCCAGATACTAGAAGTTGTTGCTAAACTGGTCTCACACTTAAATCGCAGGAATCCATTTAAAAATGGAGTCCCTGGAAGAAATTGGTTCAAAATATTTTTACACAAATATCCTGTTATTTCTAAAAGCGTACTTTACTTAAGGAAACGAAGTAAATGTAAAGATACACAAGAAAAATCCGACATATGGGCAGACAAATTTGACGCGTACATAGAAAATCAAAGTTTGTTCTGTATTTTTGAAGATCCTAAGAGAATATTCAATATTGGCAAAGCGGAGTTCTTCTTTTGCTCCAAAGAAAAACGTATTTTAATGGAAAGTGATAAGAAAACGAACATTCAAGTGTCAGATGACAAAAAGTATACATCAGTTTTGATAAATATATGCGCAGACGGGGACTCTGCGCCGCCAATGATGCTGTTTCCTCATGGTAGTAAATCGTGTGTAAATTTAATTCAACCTTCTTGGTGGGGGTATGGTAACACTGACACTGGTTGTATAGATATGGAAACATTTGAAGAATATGTTACAAATGTATTTTATCCTTGGCTTTTACAAAAAGAAGTTAAATTTCCGGTGGCCTTGTTGTTAGATGGACGGTCTTCTCGCATATCGCCGTCTCTGCTCACGTTTTGCCAAGAAAAGGGTTTGATATTGCTTGGTTTTGTGCCCAACATAAAACATCCATTATATACGGCGGTTTTTCAACAAGAACAAGAAAGAAATGAAAAGGAGTCTGAAAAGCAGATGGCGCTGCTCGACCCACCAGGGGAGGAAGGGCTGCGCGGCCAGGATACAGCTTGTCCTCTCCAGTTCATAAAGACTTCGCGAGGCACACTGCTCCTGGCTCATGAAGGTTACACCTACCACCTGAAGAAACACGCCAAGTATCCGGACAACATTAAGCCACCAATCTTTACCATAACTTCTCGTGGCGCTCGCATCATCTCATTCCGTGGCTACGACTACAGCCGACATCGCACAGTGGGCCCCAAGACCAGGTGGTACTGCAGGACGCACTACAACCGAGGCTGTTCTGCAGTCATCTTCACCATCAACGACATCATCGTTAAGTGCAATGAGCTGCATTCTCATGCTCCTTCACTGTACCGAATTCCATATAAATCATCTAACACGGACGAAGGATTTCTTCCACACACTGTATCTAAAGATTAA
Protein Sequence: MTRLHKPIGCQSLVACAVHSLGKMEENGFTFVTSLKGKRLIRYKNYNFYACRSTGKRTRWVCSTHHTKGCRAAIITFDNEAIRYFKSSKRTDRGSDFIIQGDFKLPGSVLVSESESLIEYGTCKKKDDDFYPGLAAASSWSASEHILKRTSTRRRCVGCYANNRLAFIASVASNRTKKIRTVCCKCDRTAVLTLNPKREGGSQLIVIKKELQVNSNLLIGPPYECNECHRHVTSKAHMKKHLMTHSDVRPYQCAICDRRFRDKSKMAEHMRSHTGEKPHECVVCRRRFALKHNLKTHIRTHTDVNTKTSNIFTSFKIFTALSENENYCNEVKTRGEVIEERGPPLVKTPVASRPPDAIRYDNIAHFPRYISQGRCDLQFIHSKKGNPMLVLKGYTYYRQTVSSNSRVRWLCATHHSRGCNAAAQTFRHEFLLSTRNEHTHAPTKNVKLDTKTTGARKHKTYKTQQLTAALESITSGMSIYKASRRFNIPESTLRDKRDGKYIHEKSGVQPVLNVQEETEIVDWIQHLDQNGFCVTKSQILEVVAKLVSHLNRRNPFKNGVPGRNWFKIFLHKYPVISKSVLYLRKRSKCKDTQEKSDIWADKFDAYIENQSLFCIFEDPKRIFNIGKAEFFFCSKEKRILMESDKKTNIQVSDDKKYTSVLINICADGDSAPPMMLFPHGSKSCVNLIQPSWWGYGNTDTGCIDMETFEEYVTNVFYPWLLQKEVKFPVALLLDGRSSRISPSLLTFCQEKGLILLGFVPNIKHPLYTAVFQQEQERNEKESEKQMALLDPPGEEGLRGQDTACPLQFIKTSRGTLLLAHEGYTYHLKKHAKYPDNIKPPIFTITSRGARIISFRGYDYSRHRTVGPKTRWYCRTHYNRGCSAVIFTINDIIVKCNELHSHAPSLYRIPYKSSNTDEGFLPHTVSKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00641025;
90% Identity: iTF_00641025;
80% Identity: iTF_00641025;