Esim019783.1
Basic Information
- Insect
- Elegia similella
- Gene Symbol
- -
- Assembly
- GCA_947532085.1
- Location
- OX383938.1:26519623-26521488[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-12 4.7e-10 39.8 0.0 5 40 72 108 70 113 0.89 2 2 0.99 4.2e+02 1.6 0.0 27 45 162 181 162 181 0.88
Sequence Information
- Coding Sequence
- ATGCGATTCAAGAGCAAATCTAAGAAGAAAGCCAAGAAAACATCCAAGAGAGAACGGGCGGACTCTAAACTGCTTTGTTCAAAATGTGGCATACAGTTTTCTACAGCTGCCGCGTGGAGGCGCCACATGAACGACAGTCATAATGTGTTTGAGTATGAAGAGAAGAAGTCTATATCCAAGAAAAAAACAGTAAATAATTATACTTTGCAAACTTTACAAACGGCTTTCGAAGCTGTCAGGAATAAAGAAATGGGATTACGGGAAGCCTGCAGAGCTTTCAATATTCCAAAAAGTACATTACAAGGTAAAGTTAAACATGACACATTTCGTACCAAACGAGGGCCTCCGCCCATCTTCAACGAAGAAGAAGAAGGAATGTTGGTTGATTTTGTGAAAGGTAAAGGTATTTTGAAAGCAAAGGCGGTGTTGGCAGAAGCTGCGGTTCTGACTAAACGGCTAAACCGAGAGAAGTTCTTCAAGAAGGGCGTGCCTGGGCTGACCTGGTACGCGAACTTCCTGAGGAGACATCCGGAGTTGAAACAATATAGGTAA
- Protein Sequence
- MRFKSKSKKKAKKTSKRERADSKLLCSKCGIQFSTAAAWRRHMNDSHNVFEYEEKKSISKKKTVNNYTLQTLQTAFEAVRNKEMGLREACRAFNIPKSTLQGKVKHDTFRTKRGPPPIFNEEEEGMLVDFVKGKGILKAKAVLAEAAVLTKRLNREKFFKKGVPGLTWYANFLRRHPELKQYR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -